View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_73 (Length: 237)
Name: NF19951_low_73
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15098904 - 15098684
Alignment:
| Q |
1 |
aactgagcatacatatatacaatagaaatcaagttgtgaaaatcttagcattgtctagcaggtgtatagaaaaatcttctccggaaaccaaagaaggcag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15098904 |
aactgagcatacatatatacaatagaaatcaagttgtgaaaatcttagcattgtctagcaggtgtatagcaaaatcttctccggaaaccaaagaaggcag |
15098805 |
T |
|
| Q |
101 |
tgtgtagtatcaatgtctccaataaccgacgagatgagtttaggtgggatatatctttgacaaatttttcaaatatgcaatttaaatattttccctaaat |
200 |
Q |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15098804 |
tgtgtagcatcaatgtctccaataaccgaagagatgagtttaggtgggatatatctttgacaaatttatcaaatatgcaatttaaatattttccctaaat |
15098705 |
T |
|
| Q |
201 |
cctatcttcattctcaatatc |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
15098704 |
cctatcttcattctcaatatc |
15098684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 15110139 - 15109919
Alignment:
| Q |
1 |
aactgagcatacatatatacaatagaaatcaagttgtgaaaatcttagcattgtctagcaggtgtatagaaaaatcttctccggaaaccaaagaaggcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15110139 |
aactgagcatacatatatacaatagaaatcaagttgtgaaaatcttagcattgtctagcaggtgtatagcaaaatcttctccggaaaccaaagaaggcag |
15110040 |
T |
|
| Q |
101 |
tgtgtagtatcaatgtctccaataaccgacgagatgagtttaggtgggatatatctttgacaaatttttcaaatatgcaatttaaatattttccctaaat |
200 |
Q |
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| T |
15110039 |
tgtgtagcatcaatgtctccaataaccgaagagatgagtttaggtgggatatatctttgacaaatttatcaaatatgcaatttaaatattttccctaaat |
15109940 |
T |
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| Q |
201 |
cctatcttcattctcaatatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
15109939 |
cctatcttcattctcaatatc |
15109919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 18619750 - 18619972
Alignment:
| Q |
1 |
aactgagcatacatatatacaatagaaatcaagttgtgaaaatcttagcattgtctagcaggtgtatagaaaaatcttctccggaaaccaaagaaggcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
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| T |
18619750 |
aactgagcatacatatatacaatagaaatcaaattgtgaaaatattagcattgtctagcagatgtatagaaaaatcttctccagacaccaaagaaggcag |
18619849 |
T |
|
| Q |
101 |
tgtgtagtatcaatg--tctccaataaccgacgagatgagtttaggtgggatatatctttgacaaatttttcaaatatgcaatttaaatattttccctaa |
198 |
Q |
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||||||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
18619850 |
tgtgtagcatcaatgtctctccaataaccgacaagatgagtttaggtaggatatatctttgacaaatttttcaaatatgcagtttaaaaattttccctaa |
18619949 |
T |
|
| Q |
199 |
atcctatcttcattctcaatatc |
221 |
Q |
| |
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|||||||| |||||||||||||| |
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| T |
18619950 |
atcctatcgtcattctcaatatc |
18619972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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