View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_low_77 (Length: 233)

Name: NF19951_low_77
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_low_77
NF19951_low_77
[»] chr8 (1 HSPs)
chr8 (19-181)||(31973191-31973353)
[»] chr6 (9 HSPs)
chr6 (19-181)||(16273286-16273448)
chr6 (19-181)||(28321333-28321495)
chr6 (19-181)||(22824594-22824757)
chr6 (68-181)||(16274712-16274826)
chr6 (68-181)||(22825783-22825897)
chr6 (68-181)||(28319961-28320076)
chr6 (19-63)||(16274501-16274545)
chr6 (19-63)||(28320242-28320286)
chr6 (19-63)||(22825572-22825616)
[»] chr2 (7 HSPs)
chr2 (19-181)||(39833007-39833169)
chr2 (19-181)||(19046944-19047106)
chr2 (19-181)||(26239902-26240064)
chr2 (68-181)||(19045569-19045683)
chr2 (69-181)||(39834721-39834834)
chr2 (19-63)||(19045850-19045894)
chr2 (19-63)||(39834509-39834553)
[»] chr1 (3 HSPs)
chr1 (19-181)||(29995947-29996109)
chr1 (68-181)||(29997373-29997487)
chr1 (19-63)||(29997162-29997206)
[»] scaffold0038 (3 HSPs)
scaffold0038 (19-181)||(112442-112604)
scaffold0038 (68-181)||(111067-111182)
scaffold0038 (19-63)||(111348-111392)
[»] chr3 (9 HSPs)
chr3 (19-177)||(32968018-32968176)
chr3 (19-180)||(42394570-42394731)
chr3 (19-181)||(10024380-10024542)
chr3 (60-181)||(10023177-10023299)
chr3 (68-181)||(42396012-42396126)
chr3 (100-181)||(32969797-32969878)
chr3 (19-63)||(42395801-42395845)
chr3 (19-63)||(10023458-10023502)
chr3 (19-63)||(32969547-32969591)
[»] scaffold0061 (1 HSPs)
scaffold0061 (19-181)||(40893-41055)
[»] scaffold0017 (1 HSPs)
scaffold0017 (19-181)||(157730-157892)


Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 31973191 - 31973353
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31973191 aatatggaacaagtgtaaaggtgactctaattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 31973290  T
Q  119 aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  31973291 aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 31973353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 16273286 - 16273448
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16273286 aatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 16273385  T
Q  119 aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  16273386 aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 16273448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 28321495 - 28321333
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28321495 aatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 28321396  T
Q  119 aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  28321395 aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 28321333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 22824594 - 22824757
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22824594 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 22824693  T
Q  119 -aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
     ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  22824694 aaattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 22824757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 16274712 - 16274826
Alignment:
Q  68 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt 166  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| ||||||||||||||||||||||    
T  16274712 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt 16274811  T
Q  167 tgattttatcttaac 181  Q
    |||||||||||||||    
T  16274812 tgattttatcttaac 16274826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 22825783 - 22825897
Alignment:
Q  68 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt 166  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| |||| |||||||||||||||||    
T  22825783 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaactttaagatcaattcaaacatt 22825882  T
Q  167 tgattttatcttaac 181  Q
    |||||||||||||||    
T  22825883 tgattttatcttaac 22825897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 28320076 - 28319961
Alignment:
Q  68 cgtataagttaagagtaaaaatt-gactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacat 165  Q
    |||||||| |||||||||||| | || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| |||||||||||||||||||||    
T  28320076 cgtataagctaagagtaaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacat 28319977  T
Q  166 ttgattttatcttaac 181  Q
    ||||||||||||||||    
T  28319976 ttgattttatcttaac 28319961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 16274501 - 16274545
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaac 63  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  16274501 aatatggaacaagtgtaaagttgactcttattatttttagcaaac 16274545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 28320286 - 28320242
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaac 63  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  28320286 aatatggaacaagtgtaaagttgactcttattatatttagcaaac 28320242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 22825572 - 22825616
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaac 63  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||    
T  22825572 aatatgaaacaagtgtaaagttgactcttattatttttatcaaac 22825616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 39833007 - 39833169
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39833007 aatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 39833106  T
Q  119 aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  39833107 aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 39833169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 19047106 - 19046944
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19047106 aatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 19047007  T
Q  119 aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  19047006 aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 19046944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 26240064 - 26239902
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26240064 aatatggaataagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaaaagtaaaaattgactcctaaaattctattggatttgaat 26239965  T
Q  119 aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||| || |||||    
T  26239964 aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttaatattaac 26239902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 19045683 - 19045569
Alignment:
Q  68 cgtataagttaagagtaaaaattgactccta-aaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt 166  Q
    |||||||| ||||||||||||| || ||||| |||||||||||||||||| |||||||||| ||| ||| ||  ||| ||||||||||||||||||||||    
T  19045683 cgtataagctaagagtaaaaatagagtcctataaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt 19045584  T
Q  167 tgattttatcttaac 181  Q
    |||||||||||||||    
T  19045583 tgattttatcttaac 19045569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 39834721 - 39834834
Alignment:
Q  69 gtataagttaagagtaaaaattgactccta-aaattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacattt 167  Q
    ||||||| |||||||||||||  | ||||| |||||||||||||||||| |||||||||| ||| ||| ||  ||| |||||||||||||||||||||||    
T  39834721 gtataagctaagagtaaaaatatagtcctataaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacattt 39834820  T
Q  168 gattttatcttaac 181  Q
    ||||||||||||||    
T  39834821 gattttatcttaac 39834834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 19045894 - 19045850
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaac 63  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  19045894 aatatggaacaagtgtaaagttgactcttattatttttagcaaac 19045850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 39834509 - 39834553
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaac 63  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  39834509 aatatggaacaagtgtaaagttgactcttattatttttagcaaac 39834553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 29995947 - 29996109
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29995947 aatatggaacaagtgtaaaggttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 29996046  T
Q  119 aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  29996047 aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 29996109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 29997373 - 29997487
Alignment:
Q  68 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt 166  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| ||||||||||||||||||||||    
T  29997373 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt 29997472  T
Q  167 tgattttatcttaac 181  Q
    |||||||||||||||    
T  29997473 tgattttatcttaac 29997487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 29997162 - 29997206
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaac 63  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  29997162 aatatggaacaagtgtaaagttgactcttattatttttagcaaac 29997206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 112604 - 112442
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  112604 aatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 112505  T
Q  119 aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  112504 aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 112442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 111182 - 111067
Alignment:
Q  68 cgtataagttaagagtaaaaatt-gactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacat 165  Q
    |||||||| |||||||||||| | || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| |||| ||||||||||||||||    
T  111182 cgtataagctaagagtaaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaactttaagatcaattcaaacat 111083  T
Q  166 ttgattttatcttaac 181  Q
    ||||||||||||||||    
T  111082 ttgattttatcttaac 111067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 111392 - 111348
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaac 63  Q
    |||||||||||||||||||| ||||||||||||| ||||||||||    
T  111392 aatatggaacaagtgtaaagttgactcttattatatttagcaaac 111348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 32968018 - 32968176
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32968018 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattagatttgaat 32968117  T
Q  119 aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatct 177  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  32968118 aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatct 32968176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 42394570 - 42394731
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42394570 aatatggaacaagtgtaaaagttactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 42394669  T
Q  119 aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaa 180  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||    
T  42394670 aattatattttcaataataatcacaacttttagatcaattcaaacatttgattttatcttaa 42394731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 10024542 - 10024380
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10024542 aatatggaacaagtgtaaaggtgactcttactatttttaacaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 10024443  T
Q  119 aattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    ||||||||||||||||||||  ||| |||||||||||||||||||||||||||| ||||||||    
T  10024442 aattatattttcaataataatcacaacttttagatcaattcaaacatttgatttcatcttaac 10024380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 181
Target Start/End: Complemental strand, 10023299 - 10023177
Alignment:
Q  60 aaacatgtcgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaatt 158  Q
    ||||||| |||||||| ||||||||||||| || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| ||||||||||||||    
T  10023299 aaacatgacgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaatt 10023200  T
Q  159 caaacatttgattttatcttaac 181  Q
    ||| |||||||||||||||||||    
T  10023199 caagcatttgattttatcttaac 10023177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 42396012 - 42396126
Alignment:
Q  68 cgtataagttaagagtaaaaattgactcctaa-aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatt 166  Q
    |||||||| ||||||||||||| || |||||  ||||||||||||||||| |||||||||| ||| ||| ||  ||| ||||||||||||||||||||||    
T  42396012 cgtataagctaagagtaaaaatagagtcctattaattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatt 42396111  T
Q  167 tgattttatcttaac 181  Q
    |||||||||||||||    
T  42396112 tgattttatcttaac 42396126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 32969797 - 32969878
Alignment:
Q  100 aattctattggatttgaataattatattttcaataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    ||||||||||||||||| |||||||||| ||| ||| ||  ||| |||||||||||||||||||||||||||||||||||||    
T  32969797 aattctattggatttgattaattatattctcattaacaatcacaacttttagatcaattcaaacatttgattttatcttaac 32969878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 42395801 - 42395845
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaac 63  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  42395801 aatatggaacaagtgtaaagttgactcttattatttttagcaaac 42395845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 10023502 - 10023458
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaac 63  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  10023502 aatatagaacaagtgtaaagttgactcttattatttttagcaaac 10023458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 32969547 - 32969591
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaac 63  Q
    ||||||||| |||||||||| ||||||||||||||||| ||||||    
T  32969547 aatatggaagaagtgtaaagttgactcttattattttttgcaaac 32969591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 41055 - 40893
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  41055 aatatggaacaagtgtaaaggtgactcttattatttt-agcaaacatgtcgtataagttaagagtcaaaatcgactcctaaaattctattggatttgaat 40957  T
Q  119 aattatattttc-aataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    |||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  40956 aattatattttcaaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 40893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 157730 - 157892
Alignment:
Q  19 aatatggaacaagtgtaaaggtgactcttattatttttagcaaacatgtcgtataagttaagagtaaaaattgactcctaaaattctattggatttgaat 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  157730 aatatggaacaagtgtaaaggtgactcttattatttt-agcaaacatgtcgtataagttaagagtcaaaatcgactcctaaaattctattggatttgaat 157828  T
Q  119 aattatattttc-aataataaatacagcttttagatcaattcaaacatttgattttatcttaac 181  Q
    |||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  157829 aattatattttcaaataataatcacaacttttagatcaattcaaacatttgattttatcttaac 157892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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