View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19951_low_8 (Length: 561)
Name: NF19951_low_8
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19951_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 550
Target Start/End: Original strand, 32910191 - 32910713
Alignment:
| Q |
19 |
actactttcgttgcaaatttatattttcttcatccccaccttcttcacaaattacgacccaagcactataatatttctctctgtatcgttctgttccatc |
118 |
Q |
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| T |
32910191 |
actactttcgttgcaaatttatattttcttcatccccaccttcttcacaaattacgacccaagcactata---tttctctctgtatcgttctgttccatc |
32910287 |
T |
|
| Q |
119 |
gttctcgccaacaacccctttcaacgttttactgcataagtcttcaccgttctttttcttcccttctgctaattagttaattaattcatagcatttgttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32910288 |
gttctcgccaacaacccctttcaacgttttactgcataagtcttcaccgttctttttcttcccttctgctaattagttaattaattcatagcatttgttt |
32910387 |
T |
|
| Q |
219 |
cttttatattttcccgtgttttcnnnnnnnnnnnnnnnnnnnnnatcccgaatttgatttttctgtttctcttttgaatcgttcttaaagnnnnnnncat |
318 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
32910388 |
cttttatattttcccgtgttttc------cttcttcttcttcttatcccgaatttgatttttctgtttctcttttgaatcgttcttaaagtttttttcgt |
32910481 |
T |
|
| Q |
319 |
acttcaaaggttcatgtactgttaccattcgnnnnnnncgacgaattattagggtttttgtgagatttgtgttggtaataattcaaattgtgttctactg |
418 |
Q |
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||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32910482 |
acttcaaaggttcgtgtactattaccattcgtttttttcgacgaattattagggtttttgtgagatttgtgttggtaataattcaaattgtgttctactg |
32910581 |
T |
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| Q |
419 |
ttatcatctgcatcgaagaaccctaatccacaacgaaccctaattccttcttcaatcgacaattcctgtgattcttaaatctgcaaacaacggtttctgt |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32910582 |
ttatcatctgcatcgaagaaccctaatccacaacgaaccctaattccttcttcaatcgacaattcctgtgattcttaaatctgcaaacaacggtttctgt |
32910681 |
T |
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| Q |
519 |
gattccttcaacgatttctgctacggattcat |
550 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
32910682 |
gattccttcaacgatttctgctacggattcat |
32910713 |
T |
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