View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19951_low_82 (Length: 207)

Name: NF19951_low_82
Description: NF19951
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19951_low_82
NF19951_low_82
[»] chr6 (26 HSPs)
chr6 (16-203)||(5433939-5434126)
chr6 (16-203)||(5447491-5447678)
chr6 (16-200)||(5128410-5128594)
chr6 (16-193)||(5447061-5447238)
chr6 (10-200)||(5383224-5383414)
chr6 (16-203)||(5690149-5690336)
chr6 (16-203)||(5176643-5176830)
chr6 (16-203)||(5278470-5278657)
chr6 (10-193)||(5344759-5344942)
chr6 (16-198)||(5066689-5066871)
chr6 (19-203)||(5102604-5102788)
chr6 (10-203)||(5257324-5257517)
chr6 (16-200)||(5096612-5096796)
chr6 (58-200)||(5354607-5354749)
chr6 (73-200)||(5425871-5425998)
chr6 (61-207)||(5181913-5182059)
chr6 (16-197)||(5370475-5370656)
chr6 (16-203)||(5073898-5074085)
chr6 (61-198)||(5350343-5350480)
chr6 (16-200)||(5157621-5157805)
chr6 (92-207)||(5396930-5397045)
chr6 (23-203)||(5284379-5284559)
chr6 (92-193)||(5179521-5179622)
chr6 (16-137)||(5243923-5244044)
chr6 (16-85)||(5147004-5147073)
chr6 (92-200)||(5281280-5281388)
[»] scaffold0294 (1 HSPs)
scaffold0294 (19-203)||(8890-9074)
[»] chr4 (6 HSPs)
chr4 (16-193)||(4344550-4344727)
chr4 (17-203)||(4123929-4124115)
chr4 (10-187)||(4360975-4361152)
chr4 (17-187)||(4335250-4335420)
chr4 (23-187)||(4320625-4320789)
chr4 (29-203)||(4133415-4133587)
[»] chr5 (4 HSPs)
chr5 (17-200)||(8877514-8877697)
chr5 (89-137)||(20812254-20812302)
chr5 (89-137)||(20838609-20838657)
chr5 (89-128)||(15802888-15802927)
[»] chr3 (6 HSPs)
chr3 (16-203)||(47986842-47987029)
chr3 (16-203)||(47996129-47996316)
chr3 (16-203)||(48005416-48005603)
chr3 (16-203)||(48014701-48014888)
chr3 (57-137)||(32411256-32411336)
chr3 (89-134)||(6905985-6906030)
[»] chr2 (2 HSPs)
chr2 (58-203)||(22584204-22584349)
chr2 (79-137)||(14767123-14767181)
[»] chr7 (1 HSPs)
chr7 (91-203)||(36213819-36213931)
[»] chr8 (12 HSPs)
chr8 (55-137)||(3262802-3262884)
chr8 (55-137)||(3286691-3286773)
chr8 (89-137)||(3398696-3398744)
chr8 (70-137)||(13808663-13808730)
chr8 (12-137)||(3267374-3267499)
chr8 (92-137)||(3364149-3364194)
chr8 (92-137)||(3391712-3391757)
chr8 (76-137)||(7164828-7164889)
chr8 (89-137)||(3314835-3314883)
chr8 (89-137)||(3407499-3407547)
chr8 (89-137)||(31175824-31175872)
chr8 (87-137)||(3375053-3375103)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 5433939 - 5434126
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| ||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| ||| |||| ||||    
T  5433939 attcttctgataaatttggaagattgtattggcctatgtaacctcccaagaagcatatataagttgaaatctttgaaaactctcatccttactggctgtt 5434038  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
    ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5434039 taaagattgacaatttggaagatgacttggaacatatggaatctttaaccactctgcttgcaaataacactgcaataaaaagagtgcc 5434126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 5447491 - 5447678
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| ||||||||||||||| ||||||| |||| ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  5447491 attcttctgataaatttggaagattgtattggcctaggtaacctcccaagaagcatctataagttgaaatctttgaaaactctcattctttctggttgtt 5447590  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
    |||||||||||||  ||||||| || || ||| | ||||||||||||||||||||||| |||||||| ||| |||||| || ||||||    
T  5447591 taaagattgacaagctggaagaggacttggaacagatggaatctttaaccactctgcttgcaaataatacttcaataacaacagtgcc 5447678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 5128594 - 5128410
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| ||||||||||||| | | |||||||||  ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||     
T  5128594 attcttctgataaatttggaagattgcattagcctatgtagcctcccaagaagcatctataagttgaaatctttgaaaactctcattctttctggttgta 5128495  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagt 200  Q
    ||| ||||||||| |||||||| || || ||| | |||||||| ||||| |||||||| ||||||||||||||||||||||||||    
T  5128494 taatgattgacaagttggaagaggacttggaacaaatggaatcattaacaactctgcttgcaaataacactgcaataaaaagagt 5128410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 5447061 - 5447238
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| | |||||||| || | | |||||||||  |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||    
T  5447061 attcttctgataaacttggaagactgcattagcctatgtagcctcccaaaaagcatctataagttgaaatctttgaaaactctcgttctttctggttgtt 5447160  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataa 193  Q
    |||||||||||||  ||||||| || || ||  | |||||||||||||||||||| || |||||||||||| ||||||    
T  5447161 taaagattgacaaggtggaagaggacttcgagaaaatggaatctttaaccactcttcttgcaaataacacttcaataa 5447238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 5383224 - 5383414
Alignment:
Q  10 aagaatattcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctg 109  Q
    ||||| |||||||||||  |||||||||| |||  | |||||||||  ||||||| |||||| ||||||||||||| | |||||||||||||||||||||    
T  5383224 aagaaaattcttctgattaatttggaagactgtgttagcctatgtagcctcccaagaagcatttataagttgaaatctctgaaaactctcattctttctg 5383323  T
Q  110 gttgtttaaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagt 200  Q
    ||||||||||||||  ||| |||||||| ||  | ||| | |||||||||||||| ||| |||| ||| ||||||||||||||| ||||||    
T  5383324 gttgtttaaagattaccaagttggaagaggacatagaacaaatggaatctttaactactttgcttgcagataacactgcaataacaagagt 5383414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 5690336 - 5690149
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| ||||||||||||||| | |||| | ||| || |||| |||||| ||||||||||||| | ||||||||||||||||||| || ||||    
T  5690336 attcttctgataaatttggaagattgtattagcctttctaaccttccaagaagcatctataagttgaaatctctgaaaactctcattctttccgggtgtt 5690237  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
     || |||| |||| |||||||| || || ||| | ||||||||||||||||||||||| |||||| |||||| ||||| ||| |||||    
T  5690236 caatgattaacaagttggaagaggacttggaacaaatggaatctttaaccactctgcttgcaaatgacactggaataacaagtgtgcc 5690149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 5176643 - 5176830
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| | ||||||||||||| | ||||    | ||| |||| ||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  5176643 attcttctgataaacttggaagattgtattagccttcagagtcttccaagaagtatctataagttgaaatctttgaaaacactcattctttctgggtgtt 5176742  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
      | ||||||||| |||||||| || || ||| | |||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  5176743 cgatgattgacaagttggaagaggacttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcc 5176830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 5278470 - 5278657
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| | ||||||||||||| | ||||    | ||| |||| ||| || ||||||||||||| ||||||||| |||||||||||||| ||||    
T  5278470 attcttctgataaacttggaagattgtattagccttcagagtcttccaagaagtatctataagttgaaatctttgaaaacactcattctttctgggtgtt 5278569  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
      | ||||||||| |||||||| || || ||| | |||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  5278570 cgatgattgacaagttggaagaggacttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcc 5278657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 5344759 - 5344942
Alignment:
Q  10 aagaatattcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctg 109  Q
    ||||| |||||||| ||  |||||||||| |||| | |||||||||  || |||| |||||| ||||||||||| | | | ||||||||||||||||| |    
T  5344759 aagaaaattcttctcattaatttggaagactgtattagcctatgtagcctgccaagaagcatctataagttgaattctctaaaaactctcattctttcgg 5344858  T
Q  110 gttgtttaaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataa 193  Q
    ||||||||||||||||||| |||||||| || || ||| | ||| |||||||||||| |||| | |||||||||||||||||||    
T  5344859 gttgtttaaagattgacaagttggaagaggacttagaacaaatgaaatctttaaccattctgatcgcaaataacactgcaataa 5344942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 5066871 - 5066689
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||| ||||||||||||||||||  | ||||  |||| || |||| |||||| ||||||||||||| | | |||||||||||||||||||| |||     
T  5066871 attcttctaatagatttggaagattgtgttagccttcgtaaccttccaagaagcatctataagttgaaatctcttaaaactctcattctttctgggtgta 5066772  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaaga 198  Q
    ||| ||||||||| || ||||| ||  | ||| | ||||||||||||||||||||||| ||| |||| |||||||||||||||    
T  5066771 taatgattgacaagttagaagaggacatagaacaaatggaatctttaaccactctgcttgcacataaaactgcaataaaaaga 5066689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 5102788 - 5102604
Alignment:
Q  19 cttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaa 118  Q
    ||||| ||||||||||||||||||  | ||||  |||  || |||| |||||| ||||||||||||| ||||||||  |||||||||||||| |||||||    
T  5102788 cttctaatagatttggaagattgtgttagccttcgtagccttccaagaagcatctataagttgaaatctttgaaaatactcattctttctgggtgtttaa 5102689  T
Q  119 agattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
     ||||||||| |||||||| || || ||| | |||||||| ||||||||||| || ||||| ||||||||||||| || ||||||    
T  5102688 tgattgacaagttggaagacgacttggaacaaatggaatcattaaccactcttctagcaaacaacactgcaataacaacagtgcc 5102604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 10 - 203
Target Start/End: Complemental strand, 5257517 - 5257324
Alignment:
Q  10 aagaatattcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctg 109  Q
    ||||| ||| || ||||| ||||||||||||||| | || ||||  | ||||||| |||||| ||||||||||||| | | |||||| ||||||||||||    
T  5257517 aagaaaattgttttgataaatttggaagattgtattagcttatgcgaactcccaagaagcatctataagttgaaatctctaaaaactttcattctttctg 5257418  T
Q  110 gttgtttaaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
    | |||| || ||||||||| |||||||| || || ||| | |||  |||||||||||||||  | ||||||||||||||||||| |||||||||    
T  5257417 ggtgttcaatgattgacaagttggaagaggacttagaacagatgacatctttaaccactctaattgcaaataacactgcaataacaagagtgcc 5257324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 5096612 - 5096796
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||| ||||||||||||||||||  | ||||  |||  || |||  |||||| ||||||||||||| | |||||||||||||||||||||| |||     
T  5096612 attcttctaatagatttggaagattgtgttagccttcgtagccttccaggaagcatctataagttgaaatctctgaaaactctcattctttctgggtgta 5096711  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagt 200  Q
    ||| ||||||| | |||||||| ||  | ||| | |||||||| ||||||| |||||| ||||||||||||| ||||||||||||    
T  5096712 taatgattgacgagttggaagaggacatagaacaaatggaatcattaaccattctgcttgcaaataacactggaataaaaagagt 5096796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 58 - 200
Target Start/End: Complemental strand, 5354749 - 5354607
Alignment:
Q  58 ctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaatttggaagatgagtttgaagatatggaat 157  Q
    ||||||| |||||| || |||||||||| ||||||||||||||||||||||||||||  |||| | ||||| |||||||| || || ||| |  ||||||    
T  5354749 ctcccaagaagcatctacaagttgaaatctttgaaaactctcattctttctggttgtaaaaagttagacaagttggaagaggacttggaacaattggaat 5354650  T
Q  158 ctttaaccactctgctggcaaataacactgcaataaaaagagt 200  Q
    |||||||||| ||||| |||||| |||||||||||| ||||||    
T  5354649 ctttaaccaccctgcttgcaaatgacactgcaataacaagagt 5354607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 5425871 - 5425998
Alignment:
Q  73 tataagttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgc 172  Q
    ||||||||||||| | |||||||||||||||||||||| ||| ||| ||||||||| |||||||| ||  | ||| | |||||||||||||||||||||     
T  5425871 tataagttgaaatctctgaaaactctcattctttctgggtgtgtaatgattgacaagttggaagaggacatagaacaaatggaatctttaaccactctga 5425970  T
Q  173 tggcaaataacactgcaataaaaagagt 200  Q
    | ||| |||| |||||||||||||||||    
T  5425971 ttgcacataaaactgcaataaaaagagt 5425998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 61 - 207
Target Start/End: Complemental strand, 5182059 - 5181913
Alignment:
Q  61 ccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaatttggaagatgagtttgaagatatggaatctt 160  Q
    |||| |||||| ||||| |||||||  || || ||||||||||||||||| ||||||| ||||||||| |||||||| || || ||| | ||| ||||||    
T  5182059 ccaagaagcatctataatttgaaatcattaaacactctcattctttctgggtgtttaatgattgacaagttggaagaggatttggaacaaatgaaatctt 5181960  T
Q  161 taaccactctgctggcaaataacactgcaataaaaagagtgccgttt 207  Q
    |||||||  || | ||||||||||||||||||| |||||||||||||    
T  5181959 taaccacattgattgcaaataacactgcaataacaagagtgccgttt 5181913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 5370475 - 5370656
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||| |||||||| |||||||||  | ||||  |||| || |||| |||||| ||||||||||||| | | || ||||| |||||||| || |||     
T  5370475 attcttctaatagattttgaagattgtgttagccttcgtaaccttccaagaagcatttataagttgaaatctctaaagactcttattctttcagggtgtg 5370574  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaag 197  Q
    ||| |||||| || |||||||| ||  | ||| | |||||||| |||||||||||||| |||||||||||||||||||||||    
T  5370575 taatgattgagaagttggaagaggatatagaacagatggaatcattaaccactctgcttgcaaataacactgcaataaaaag 5370656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 5074085 - 5073898
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| ||||||||||||||| ||| ||    |  || |||| ||| || ||||||||||||| | | ||||||||||||||||| || ||||    
T  5074085 attcttctgataaatttggaagattgtattggtcttcagagccttccaagaagtatctataagttgaaatctctaaaaactctcattctttccgggtgtt 5073986  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
     || ||||||||| |||||||| || || ||| | |||  |||||||||||||||| | ||||||||||| ||||||| |||||||||    
T  5073985 caatgattgacaagttggaagaggacttagaacagatgacatctttaaccactctgatagcaaataacaccgcaataacaagagtgcc 5073898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 61 - 198
Target Start/End: Original strand, 5350343 - 5350480
Alignment:
Q  61 ccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaatttggaagatgagtttgaagatatggaatctt 160  Q
    |||| |||||| | ||||||||||| | | ||||||||||||||||| || ||| ||| ||||||||| |||||||| ||  | ||| | ||||||||||    
T  5350343 ccaagaagcatctttaagttgaaatctctcaaaactctcattctttcagggtgtataatgattgacaagttggaagaggacatagaacaaatggaatctt 5350442  T
Q  161 taaccactctgctggcaaataacactgcaataaaaaga 198  Q
    ||||||||||||| ||| |||| |||||||||||||||    
T  5350443 taaccactctgcttgcacataaaactgcaataaaaaga 5350480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 5157805 - 5157621
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||| ||||||||||||||||||  | ||||  | |  || |||| |||||| ||||||||||||| | |||||| | | |||||||| || |||     
T  5157805 attcttctaatagatttggaagattgtgttagccttcgaagccttccaagaagcatctataagttgaaatctctgaaaattttaattctttcagggtgta 5157706  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagt 200  Q
    ||| ||||||||| |||||||| ||  | ||| | ||||||||||||||||||||||| ||| |  |||||||||||||||||||    
T  5157705 taatgattgacaagttggaagaggacatagaacagatggaatctttaaccactctgcttgcacacgacactgcaataaaaagagt 5157621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 5396930 - 5397045
Alignment:
Q  92 aaactctcattctttctggttgtttaaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaat 191  Q
    |||||||  |||||||||| ||||||  ||||||||| |||||||| || || ||| | |||||||||||||||||  || | |||||||||||||||||    
T  5396930 aaactcttcttctttctgggtgtttactgattgacaaattggaagaagatttggaacagatggaatctttaaccaccttggttgcaaataacactgcaat 5397029  T
Q  192 aaaaagagtgccgttt 207  Q
    ||||||||||||||||    
T  5397030 aaaaagagtgccgttt 5397045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 5284559 - 5284379
Alignment:
Q  23 tgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaaagat 122  Q
    ||||| |||| |||| ||||| | || ||||||  ||||||  |||||| ||||||||||||| | | |||||| ||||||||| ||| |||| || |||    
T  5284559 tgataaattttgaaggttgtattagcttatgtagcctcccacgaagcatctataagttgaaatctctaaaaactttcattctttttgggtgttcaatgat 5284460  T
Q  123 tgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
    |||||| |||||||| || || ||| | |||  |||||||||||||||| | || |||||||| ||||||| |||||||||    
T  5284459 tgacaagttggaagaggacttagaacagatgacatctttaaccactctgatagctaataacaccgcaataacaagagtgcc 5284379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 5179521 - 5179622
Alignment:
Q  92 aaactctcattctttctggttgtttaaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaat 191  Q
    ||||||| ||||||||||| |||| ||||||| |||| |||||||| || || ||||| |||||||| ||||| || ||| | || ||| ||||||||||    
T  5179521 aaactctgattctttctgggtgttcaaagattaacaagttggaagaggacttggaagaaatggaatccttaacgaccctgattgctaatgacactgcaat 5179620  T
Q  192 aa 193  Q
    ||    
T  5179621 aa 5179622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 5244044 - 5243923
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||| ||||||||||||||||||  | ||||  | |  || |||| |||||| ||||||||||||| | |||||||| ||||||| || || |||     
T  5244044 attcttctaatagatttggaagattgtgttagccttcgaagccttccaagaagcatctataagttgaaatctctgaaaactttcattctctcagggtgta 5243945  T
Q  116 taaagattgacaatttggaaga 137  Q
    ||| |||||| || ||||||||    
T  5243944 taatgattgagaagttggaaga 5243923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 5147073 - 5147004
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaat 85  Q
    |||||||||||| ||||||||||||||||| ||||  | | ||| |||| ||| ||||||| ||||||||    
T  5147073 attcttctgataaatttggaagattgtactagccttcgaagtcttccaagaagtatatataggttgaaat 5147004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 5281280 - 5281388
Alignment:
Q  92 aaactctcattctttctggttgtttaaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaat 191  Q
    ||||||| ||||||||||| |||| || |||| |||| || ||||| || || ||| | |||||||| ||||| || ||| | || ||| ||||||||||    
T  5281280 aaactctgattctttctgggtgttcaatgattaacaagttagaagaggacttggaacaaatggaatccttaacgaccctgattgctaatgacactgcaat 5281379  T
Q  192 aaaaagagt 200  Q
    || ||||||    
T  5281380 aacaagagt 5281388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 9074 - 8890
Alignment:
Q  19 cttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaa 118  Q
    ||||| ||||||||||||||||||  | ||||  |||  || |||| |||||| ||||||||||||| | |||||||||||||||||||||| ||| |||    
T  9074 cttctaatagatttggaagattgtgttagccttcgtagccttccaagaagcatctataagttgaaatctctgaaaactctcattctttctgggtgtataa 8975  T
Q  119 agattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
     ||||||||| |||||||| ||  | ||| | ||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||    
T  8974 tgattgacaagttggaagaggacatagaacagatggaatctttaaccactctgcttgcagataacactgcattaacaagagtgcc 8890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 9e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 4344550 - 4344727
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||| ||||| ||||| || |||||| | |||| ||||| || |||| || ||| |||| |||||||| | |||||||||||||||| ||||| ||||    
T  4344550 attcttttgataaatttgaaaaattgtattagcctttgtaaccttccaagaaacatctatacgttgaaatctctgaaaactctcattctatctggatgtt 4344649  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataa 193  Q
    ||| ||||||||| |||||||| || || ||| | ||||||||||||||||||||| | |||||||||||||| ||||    
T  4344650 taatgattgacaagttggaagaggacttggaacaaatggaatctttaaccactctgattgcaaataacactgctataa 4344727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 4124115 - 4123929
Alignment:
Q  17 ttcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgttt 116  Q
    ||||| ||||| ||||| ||||||||||| |||| | ||| || |||| || ||| |||  |||||||| | |||||||||||||||| || || |||||    
T  4124115 ttcttttgataaatttgaaagattgtactagcctttctaaccttccaagaaacatttattcgttgaaatctctgaaaactctcattctatcgggatgttt 4124016  T
Q  117 aaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
    || ||||||||| |||||||| ||||| ||| | ||||||||||||||||||||| | |||||||| ||||| |||| || ||||||    
T  4124015 aatgattgacaagttggaagaggagttggaacaaatggaatctttaaccactctgattgcaaataatactgctataacaaaagtgcc 4123929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 10 - 187
Target Start/End: Original strand, 4360975 - 4361152
Alignment:
Q  10 aagaatattcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctg 109  Q
    ||||| |||||| ||||| ||||| ||||||| | | |||| ||||| || |||| || ||| |||| |||||||| | |||||||||||||||| ||||    
T  4360975 aagaaaattcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaaatctctgaaaactctcattctatctg 4361074  T
Q  110 gttgtttaaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactg 187  Q
    | |||| || ||||||||  |||||||| || || ||| | ||||||||||||||||||||| | |||||||||||||    
T  4361075 gatgttcaatgattgacacgttggaagaggacttggaacaaatggaatctttaaccactctgattgcaaataacactg 4361152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 4335250 - 4335420
Alignment:
Q  17 ttcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgttt 116  Q
    ||||| ||||| ||||| ||||||| | | |||| ||||| || |||| || ||| |||| |||||| | | |||||||||||||||| || || |||||    
T  4335250 ttcttttgataaatttgaaagattgcattagcctttgtaaccttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgttt 4335349  T
Q  117 aaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactg 187  Q
    |||||||||||| |||||||| || || ||| | ||||||||||||||||||||  ||||| |||||||||    
T  4335350 aaagattgacaagttggaagaggacttggaacaaatggaatctttaaccactctcatggcagataacactg 4335420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 4320789 - 4320625
Alignment:
Q  23 tgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaaagat 122  Q
    ||||| ||||| ||||||||| | |||| ||||  || |||| || ||| |||| |||||||  | |||| ||||||||||| || || ||||||| |||    
T  4320789 tgataaatttgaaagattgtattagcctttgtagccttccaagaaacatctatacgttgaaaactctgaatactctcattctatcgggatgtttaatgat 4320690  T
Q  123 tgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactg 187  Q
    |||||| |||||||| || || ||| | ||||||||||||||||| ||| | |||||||| ||||    
T  4320689 tgacaagttggaagaggacttggaacaaatggaatctttaaccaccctgattgcaaataatactg 4320625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 4133587 - 4133415
Alignment:
Q  29 atttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaa 128  Q
    ||||| |||| |||||| ||||  |||| || |||| || ||| |||  |||||||| | |||||||||| ||||||||||| |||||||  ||||||||    
T  4133587 atttgaaagactgtactagccttcgtaaccttccaagaaccatctattcgttgaaatctctgaaaactcttattctttctggctgtttaattattgacaa 4133488  T
Q  129 tttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
     |||||||  || || ||| | ||||| ||||||||||||||| | |   ||||||||||||||| || ||||||    
T  4133487 attggaag--gacttggaacaaatggagtctttaaccactctgattgtggataacactgcaataacaaaagtgcc 4133415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 8877514 - 8877697
Alignment:
Q  17 ttcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgttt 116  Q
    ||||| ||||| ||||||||||||||| | ||||  | |  || |||| ||| ||||| |||||||||| | | ||| |||||||||||||||| ||||     
T  8877514 ttcttttgataaatttggaagattgtattagccttcggagccttccaagaagtatatacaagttgaaatctctaaaatctctcattctttctgggtgttc 8877613  T
Q  117 aaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagt 200  Q
    || ||||||||| ||||| || || || ||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  8877614 aatgattgacaagttggaggaggacttagaacagatgaaatctttaaccactctgcttgcaaataacactgcaataaaaagagt 8877697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 20812254 - 20812302
Alignment:
Q  89 tgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    |||||||||| |||||||||||||||| ||||||||| || ||||||||    
T  20812254 tgaaaactcttattctttctggttgttcaaagattgagaagttggaaga 20812302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 20838609 - 20838657
Alignment:
Q  89 tgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    |||||||||| |||||||||||||||| ||||||||| || ||||||||    
T  20838609 tgaaaactcttattctttctggttgttcaaagattgagaaattggaaga 20838657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 128
Target Start/End: Original strand, 15802888 - 15802927
Alignment:
Q  89 tgaaaactctcattctttctggttgtttaaagattgacaa 128  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  15802888 tgaaaactctcatcctttctggttgttcaaagattgacaa 15802927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 1e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 47987029 - 47986842
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| |||||||||| |||| | |||||||||  ||||||| ||||| ||| || || |||| | | |||||||||||||||||||| ||||    
T  47987029 attcttctgataaatttggaagactgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtt 47986930  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
    |||||||| |||| |||||||| ||  | ||| | ||| |||||||||| ||| || | |||||||||||||| |||| |||||||||    
T  47986929 taaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcc 47986842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 47996316 - 47996129
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| |||||||||| |||| | |||||||||  ||||||| ||||| ||| || || |||| | | |||||||||||||||||||| ||||    
T  47996316 attcttctgataaatttggaagactgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtt 47996217  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
    |||||||| |||| |||||||| ||  | ||| | ||| |||||||||| ||| || | |||||||||||||| |||| |||||||||    
T  47996216 taaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcc 47996129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 48005603 - 48005416
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| |||||||||| |||| | |||||||||  ||||||| ||||| ||| || || |||| | | |||||||||||||||||||| ||||    
T  48005603 attcttctgataaatttggaagactgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtt 48005504  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
    |||||||| |||| |||||||| ||  | ||| | ||| |||||||||| ||| || | |||||||||||||| |||| |||||||||    
T  48005503 taaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcc 48005416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 48014888 - 48014701
Alignment:
Q  16 attcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtt 115  Q
    |||||||||||| |||||||||| |||| | |||||||||  ||||||| ||||| ||| || || |||| | | |||||||||||||||||||| ||||    
T  48014888 attcttctgataaatttggaagactgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtt 48014789  T
Q  116 taaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
    |||||||| |||| |||||||| ||  | ||| | ||| |||||||||| ||| || | |||||||||||||| |||| |||||||||    
T  48014788 taaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcc 48014701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 32411336 - 32411256
Alignment:
Q  57 tctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    ||||||||| |  |||||| | ||||||| ||||||||||||||| ||||||||||||| ||||||||| || ||||||||    
T  32411336 tctcccaaagaagatatatcaattgaaatctttgaaaactctcatcctttctggttgttcaaagattgaaaacttggaaga 32411256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 6906030 - 6905985
Alignment:
Q  89 tgaaaactctcattctttctggttgtttaaagattgacaatttgga 134  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||    
T  6906030 tgaaaactctcattctttttggttgttcaaagattgacaaattgga 6905985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 203
Target Start/End: Complemental strand, 22584349 - 22584204
Alignment:
Q  58 ctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaatttggaagatgagtttgaagatatggaat 157  Q
    ||||||| || ||| || |||||||||| |||||||||||||||||||||||| |||| |||  || | || |||||||| || || ||| | |||||||    
T  22584349 ctcccaagaaacatctacaagttgaaatctttgaaaactctcattctttctggctgttaaaaactttataagttggaagaggacttggaacaaatggaat 22584250  T
Q  158 ctttaaccactctgctggcaaataacactgcaataaaaagagtgcc 203  Q
    |||||||||||||||| |||||| | ||||||||||||| ||||||    
T  22584249 ctttaaccactctgcttgcaaatgaaactgcaataaaaaaagtgcc 22584204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 14767181 - 14767123
Alignment:
Q  79 ttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    ||||||| ||||||||||||||| ||||| || |||| |||||||||||| ||||||||    
T  14767181 ttgaaatctttgaaaactctcatcctttccggctgttcaaagattgacaaattggaaga 14767123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 91 - 203
Target Start/End: Complemental strand, 36213931 - 36213819
Alignment:
Q  91 aaaactctcattctttctggttgtttaaagattgacaatttggaagatgagtttgaagatatggaatctttaaccactctgctggcaaataacactgcaa 190  Q
    |||||||||||||||||||| |||| |||||||||||| |||||||| ||  | ||| | |||||||||||||||||  || | ||||||||||||||||    
T  36213931 aaaactctcattctttctggatgttcaaagattgacaaattggaagaggacatggaacagatggaatctttaaccaccttgattgcaaataacactgcaa 36213832  T
Q  191 taaaaagagtgcc 203  Q
    ||| |||||||||    
T  36213831 taacaagagtgcc 36213819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 3262884 - 3262802
Alignment:
Q  55 aatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    ||||||||||| |  |||||  | ||||||| ||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  3262884 aatctcccaaagaatatataccaattgaaatctttgaaaactctcatactttctggttgctcaaagattgacaaattggaaga 3262802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 3286773 - 3286691
Alignment:
Q  55 aatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    ||||||||||| || || ||| |  |||||| |||||| |||||||| ||||||||||||| |||||||||||| ||||||||    
T  3286773 aatctcccaaagagtatctatcaactgaaatctttgaacactctcatcctttctggttgttcaaagattgacaagttggaaga 3286691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 3398744 - 3398696
Alignment:
Q  89 tgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    |||||||||||||| |||||||||||| |||||||||||| ||||||||    
T  3398744 tgaaaactctcattatttctggttgttcaaagattgacaaattggaaga 3398696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 13808663 - 13808730
Alignment:
Q  70 atatataagttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    |||||| |||||||||  ||||||||||| ||  |||||||||||| |||||||||||| ||||||||    
T  13808663 atatatcagttgaaatcattgaaaactctaatcttttctggttgttcaaagattgacaagttggaaga 13808730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 3267499 - 3267374
Alignment:
Q  12 gaatattcttctgatagatttggaagattgtactggcctatgtaatctcccaaaaagcatatataagttgaaatatttgaaaactctcattctttctggt 111  Q
    |||| ||||||||||| ||||| ||||||||||  | ||  | ||||||||||| |  ||| || | ||||| | ||||| |||||||||  ||||||||    
T  3267499 gaatcttcttctgataaatttgaaagattgtacaagtcttagcaatctcccaaagaagataaatcaattgaagtctttgacaactctcatcatttctggt 3267400  T
Q  112 tgtttaaagattgacaatttggaaga 137  Q
    |||| |||||||||||| || |||||    
T  3267399 tgttcaaagattgacaagttagaaga 3267374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 3364149 - 3364194
Alignment:
Q  92 aaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||||    
T  3364149 aaactctcatcctttctggttgttcaaagattgacaaattggaaga 3364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 3391757 - 3391712
Alignment:
Q  92 aaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||||    
T  3391757 aaactctcatcctttctggttgttcaaagattgacaaattggaaga 3391712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 7164889 - 7164828
Alignment:
Q  76 aagttgaaatatttgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    ||||||||||  |||||||||||||| ||||||||||||| |||||||| | | ||||||||    
T  7164889 aagttgaaatcattgaaaactctcatcctttctggttgttcaaagattgcctagttggaaga 7164828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 3314835 - 3314883
Alignment:
Q  89 tgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    |||||||| |||||||||||||||||| ||||||||| || ||||||||    
T  3314835 tgaaaactttcattctttctggttgttcaaagattgaaaaattggaaga 3314883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 3407547 - 3407499
Alignment:
Q  89 tgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    ||||||||||||| ||||||||||||| |||||||| ||| ||||||||    
T  3407547 tgaaaactctcatcctttctggttgttcaaagattgtcaaattggaaga 3407499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 31175824 - 31175872
Alignment:
Q  89 tgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    |||||| |||||||||||||||||||| || ||||||||| ||||||||    
T  31175824 tgaaaagtctcattctttctggttgttcaatgattgacaaattggaaga 31175872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 3375053 - 3375103
Alignment:
Q  87 tttgaaaactctcattctttctggttgtttaaagattgacaatttggaaga 137  Q
    |||||||||||| || ||||||||||||| ||||||| |||| ||||||||    
T  3375053 tttgaaaactcttatactttctggttgttcaaagattaacaagttggaaga 3375103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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