View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19952_high_1 (Length: 435)

Name: NF19952_high_1
Description: NF19952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19952_high_1
NF19952_high_1
[»] scaffold0083 (1 HSPs)
scaffold0083 (13-417)||(50336-50740)
[»] chr3 (26 HSPs)
chr3 (221-417)||(10434575-10434771)
chr3 (246-417)||(10579968-10580139)
chr3 (221-417)||(10364329-10364525)
chr3 (244-417)||(10376376-10376549)
chr3 (208-377)||(9838190-9838359)
chr3 (208-377)||(9849068-9849237)
chr3 (273-417)||(10195067-10195211)
chr3 (273-417)||(10088184-10088328)
chr3 (245-417)||(11768600-11768772)
chr3 (245-370)||(10076632-10076757)
chr3 (244-344)||(10505150-10505250)
chr3 (67-185)||(10076386-10076505)
chr3 (243-417)||(13289029-13289203)
chr3 (243-417)||(13160344-13160518)
chr3 (243-417)||(13332268-13332442)
chr3 (243-355)||(13170395-13170507)
chr3 (109-192)||(10376658-10376741)
chr3 (109-191)||(10364611-10364693)
chr3 (309-377)||(10084150-10084218)
chr3 (243-355)||(13343453-13343565)
chr3 (309-374)||(10191073-10191138)
chr3 (316-417)||(11131557-11131658)
chr3 (316-417)||(11149385-11149486)
chr3 (316-417)||(10888743-10888844)
chr3 (13-48)||(10123754-10123790)
chr3 (13-48)||(10256523-10256559)
[»] chr2 (2 HSPs)
chr2 (243-417)||(26906261-26906435)
chr2 (268-401)||(3438480-3438617)
[»] chr8 (1 HSPs)
chr8 (224-370)||(44958256-44958402)
[»] scaffold0002 (2 HSPs)
scaffold0002 (243-417)||(146470-146644)
scaffold0002 (243-355)||(136481-136593)
[»] chr5 (1 HSPs)
chr5 (243-404)||(19956981-19957146)
[»] chr7 (1 HSPs)
chr7 (318-401)||(29836112-29836195)


Alignment Details
Target: scaffold0083 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Complemental strand, 50740 - 50336
Alignment:
Q  13 aatattaaccactgctgagctttgctttccagctttaaatacagtactgttaaccattaattcacatacagctaagtcttcatgagtttacctttactat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50740 aatattaaccactgctgagctttgctttccagctttaaatacagtactgttaaccattaattcacatacagctaagtcttcatgagtttacctttactat 50641  T
Q  113 atacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgctcgtaatttccatcaaaatttc 212  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50640 atgcacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgagtcttctttgagtcattgctcgtaatttccatcaaaatttc 50541  T
Q  213 atactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||    
T  50540 atactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctcactgcaactgttcagaccttagttgagaaac 50441  T
Q  313 ttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgct 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50440 ttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgct 50341  T
Q  413 ggatg 417  Q
    |||||    
T  50340 ggatg 50336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 221 - 417
Target Start/End: Complemental strand, 10434771 - 10434575
Alignment:
Q  221 tggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttca 320  Q
    ||||||| ||||||||||||  ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  10434771 tggtttgctttaacaatatcattagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcaaaccttagttgagaaacttgcttca 10434672  T
Q  321 acagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
    | |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10434671 aaagagtttcgtgattacatcaaaaacaccaagctcaatgactcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 10434575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 246 - 417
Target Start/End: Original strand, 10579968 - 10580139
Alignment:
Q  246 aagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaaa 345  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  10579968 aagatggctgcaactatgattggaggtgctttcctctctgcaactgttcagaccttagttgagaaacttgcttcaactgagtttcttgattacatcaaaa 10580067  T
Q  346 acactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  10580068 acactaagctcaatgtctcactcttgaggcagcttaaaacaacactgctcactcttcaagttgtgctggatg 10580139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 221 - 417
Target Start/End: Complemental strand, 10364525 - 10364329
Alignment:
Q  221 tggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttca 320  Q
    ||||||| ||||||||||||   |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  10364525 tggtttgctttaacaatatcaacagaagatggctgcaactatgataggaggagcttttctctctgcaactgttcagaccttagttgagaaacttgcttca 10364426  T
Q  321 acagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
    ||||||||||||||||||||||||||||| || ||||||| |||||||||||||||| |  |||||||||| |||||||||||||||||||||||||    
T  10364425 acagagtttcttgattacatcaaaaacaccaaactcaatgactcactcttgaggcagttacaaacaacactgctcactcttcaagttgtgctggatg 10364329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 244 - 417
Target Start/End: Complemental strand, 10376549 - 10376376
Alignment:
Q  244 agaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaa 343  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  10376549 agaagatggctgcaactatgataggaggtgcttttctctctgcaactgttcagaccttagttgagaaacttgcttcaacagagtttcttgattacatcaa 10376450  T
Q  344 aaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
    |||||| || |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  10376449 aaacaccaaactcaatgtctcactcttgaggcagttaaaaacaacactgctcactcttcaagttgtgctggatg 10376376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 208 - 377
Target Start/End: Original strand, 9838190 - 9838359
Alignment:
Q  208 atttcatactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtaga 307  Q
    |||||||||||  || |||| ||| |||| |||   |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||    
T  9838190 atttcatactacctgatttgcttttacaagatcaacagaagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttga 9838289  T
Q  308 gaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcag 377  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9838290 gaaacttgcttcaactgagtttcgtgattacatcaaaaacactaagctcaatgtctcactcttgaggcag 9838359  T

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Target: chr3; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 208 - 377
Target Start/End: Original strand, 9849068 - 9849237
Alignment:
Q  208 atttcatactagttggtttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtaga 307  Q
    |||||||||||  || |||| ||| |||| |||   |||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||    
T  9849068 atttcatactacctgatttgcttttacaagatcaacagaagatggctgcaactatgattggaggcgcttttctctctgcaactgttcagaccttagttga 9849167  T
Q  308 gaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcag 377  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9849168 gaaacttgcttcaactgagtttcgtgattacatcaaaaacactaagctcaatgtctcactcttgaggcag 9849237  T

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Target: chr3; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 273 - 417
Target Start/End: Original strand, 10195067 - 10195211
Alignment:
Q  273 gcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttga 372  Q
    |||||||||||||||||| ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||||||    
T  10195067 gcttttctctctgcaactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtctcactcttga 10195166  T
Q  373 ggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  10195167 ggcagctgaaaacaacactgctcactcttcaagttgtgctggatg 10195211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 273 - 417
Target Start/End: Original strand, 10088184 - 10088328
Alignment:
Q  273 gcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttga 372  Q
    |||||||||||||||||| ||||||| || || ||||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||| ||    
T  10088184 gcttttctctctgcaactattcagaccttggttgagaaacttgcttcaacagagtttcgtgattacatcaaaaacaccaagttgaatgtctcactctcga 10088283  T
Q  373 ggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  10088284 ggcagctgaaaacaacactgctcactcttcaagttgtgctggatg 10088328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 245 - 417
Target Start/End: Original strand, 11768600 - 11768772
Alignment:
Q  245 gaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaa 344  Q
    ||||||||| ||| ||||||| ||||| ||||||||||| |||||| | || || ||  | |||||||||||||||||||||||||||||||||||||||    
T  11768600 gaagatggcggcaactatgataggaggcgcttttctctcggcaactatgcaaaccttgtttgagaaacttgcttcaacagagtttcttgattacatcaaa 11768699  T
Q  345 aacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
    ||||| ||||| ||||||||||||||||||||  | |||||||| || ||||| ||||| | ||| |||||||    
T  11768700 aacaccaagctgaatgtctcactcttgaggcaattaaaaacaaccctgctcacacttcaggctgtactggatg 11768772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 245 - 370
Target Start/End: Original strand, 10076632 - 10076757
Alignment:
Q  245 gaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaaa 344  Q
    ||||||||||||| ||||||| ||||| |||||||||  ||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||    
T  10076632 gaagatggctgcaactatgataggaggtgcttttctccatgcaactgttcagaccttagttgagaaacttacttcaactgagtttcttgattacatcaaa 10076731  T
Q  345 aacactaagctcaatgtctcactctt 370  Q
    ||||| || || ||||| ||||||||    
T  10076732 aacacaaatctgaatgtatcactctt 10076757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 344
Target Start/End: Original strand, 10505150 - 10505250
Alignment:
Q  244 agaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatcaa 343  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||    
T  10505150 agaagatggctgcaactatgataggaggaacttttctctctgcaactgttcagaccttagttgacaaacttgcttcaacagagtttcgtgattacatcaa 10505249  T
Q  344 a 344  Q
    |    
T  10505250 a 10505250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 10076386 - 10076505
Alignment:
Q  67 cattaattcacatacagctaagtcttcatgagtttacc-tttactatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcac 165  Q
    ||||||||||||||||  ||||||||| ||||| |||| ||||| |||| |||||||||||| ||||||||||| |||| ||||||||||||||||||||    
T  10076386 cattaattcacatacatataagtcttcttgagtctaccctttacaatatgcacttccaaccactcaaaaacagcgctgttagtgttatccattcattcac 10076485  T
Q  166 aaccgactcttctttgagtc 185  Q
    || ||| |||||||||||||    
T  10076486 aagcgagtcttctttgagtc 10076505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 417
Target Start/End: Original strand, 13289029 - 13289203
Alignment:
Q  243 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 342  Q
    ||||| ||||||||| || || | |||||||||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  13289029 tagaaaatggctgcaactttggtgggaggagcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 13289128  T
Q  343 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
     |||||  ||||| |||  ||||||||||    || || |||||||||| ||| ||||||| || ||||||||||    
T  13289129 gaaacaacaagctgaattcctcactcttggcagagttggaaacaacactactcgctcttcaggtggtgctggatg 13289203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 417
Target Start/End: Original strand, 13160344 - 13160518
Alignment:
Q  243 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 342  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| | |||||||||||||  |||||||  |||||||||||    
T  13160344 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacatca 13160443  T
Q  343 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| || ||||||||||    
T  13160444 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggtggtgctggatg 13160518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 417
Target Start/End: Original strand, 13332268 - 13332442
Alignment:
Q  243 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 342  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  13332268 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 13332367  T
Q  343 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| |  ||||||||||    
T  13332368 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggcggtgctggatg 13332442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 243 - 355
Target Start/End: Original strand, 13170395 - 13170507
Alignment:
Q  243 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 342  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  13170395 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 13170494  T
Q  343 aaaacactaagct 355  Q
     |||||| |||||    
T  13170495 gaaacaccaagct 13170507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 10376741 - 10376658
Alignment:
Q  109 ctatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgctc 192  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||| ||||||    
T  10376741 ctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcactcacaagcgagtcttctttgagtctttgctc 10376658  T

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Target: chr3; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 10364693 - 10364611
Alignment:
Q  109 ctatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgct 191  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||| |||||    
T  10364693 ctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcattcacaagcaagtcttctttgagtctttgct 10364611  T

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Target: chr3; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 10084150 - 10084218
Alignment:
Q  309 aaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcag 377  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  10084150 aaacttgcttcaacagattttcttgattacatcaaaaacaccaagccaaatgtctcactcttgaggcag 10084218  T

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Target: chr3; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 355
Target Start/End: Original strand, 13343453 - 13343565
Alignment:
Q  243 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 342  Q
    ||||| ||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  ||||||||| |    
T  13343453 tagaaaatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacataa 13343552  T
Q  343 aaaacactaagct 355  Q
     |||||| |||||    
T  13343553 gaaacaccaagct 13343565  T

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Target: chr3; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 309 - 374
Target Start/End: Original strand, 10191073 - 10191138
Alignment:
Q  309 aaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgagg 374  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  10191073 aaacttgcttcaacagattttcttgattacatcaaaaacaccaagccaaatgtctcactcttgagg 10191138  T

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Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 417
Target Start/End: Complemental strand, 11131658 - 11131557
Alignment:
Q  316 cttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga 415  Q
    ||||||| ||||||| ||||| |||||| ||||  ||||| |||||||||||||||| |||| |  |||||||||| ||   |||||||| |||||||||    
T  11131658 cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacactgctggttcttcaagctgtgctgga 11131559  T
Q  416 tg 417  Q
    ||    
T  11131558 tg 11131557  T

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Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 417
Target Start/End: Complemental strand, 11149486 - 11149385
Alignment:
Q  316 cttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga 415  Q
    ||||||| ||||||| ||||| |||||| ||||  ||||| |||||||||||||||| |||| |  |||||||||| ||   |||||||| |||||||||    
T  11149486 cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacactgctggttcttcaagctgtgctgga 11149387  T
Q  416 tg 417  Q
    ||    
T  11149386 tg 11149385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 417
Target Start/End: Original strand, 10888743 - 10888844
Alignment:
Q  316 cttcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctgga 415  Q
    ||||||| ||||||| ||||| |||||| ||||  ||||| |||||||||||||||| |||| |  ||||||| || ||   |||||||| |||||||||    
T  10888743 cttcaactgagtttcgtgatttcatcaacaacaaaaagctgaatgtctcactcttgaagcagttacaaacaacgctgctggttcttcaagctgtgctgga 10888842  T
Q  416 tg 417  Q
    ||    
T  10888843 tg 10888844  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 10123754 - 10123790
Alignment:
Q  13 aatattaaccactgctgagc-tttgctttccagcttt 48  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10123754 aatattaaccactgctgagcttttgctttccagcttt 10123790  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 10256523 - 10256559
Alignment:
Q  13 aatattaaccactgctgagc-tttgctttccagcttt 48  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10256523 aatattaaccactgctgagcttttgctttccagcttt 10256559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 8e-68; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 243 - 417
Target Start/End: Original strand, 26906261 - 26906435
Alignment:
Q  243 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 342  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |||||||||| ||||||| ||||||||||||||||||    
T  26906261 tagaagatggctgcagctatgataggagaagcttttctctctgcaattgttcagactttagttgagaaacttgtttcaacacagtttcttgattacatca 26906360  T
Q  343 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||||||||||||    
T  26906361 aaaacaccaagctcaatgtctcactcttgaggcagctaaaaacaacactgctcactctgcaggttgtgctggatg 26906435  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 401
Target Start/End: Complemental strand, 3438617 - 3438480
Alignment:
Q  268 gaggagcttttctctctgcaactgttcagac----tttagtagagaaacttgcttcaacagagtttcttgattacatcaaaaacactaagctcaatgtct 363  Q
    ||||||||||||||| ||||| | |||||||     ||||| ||||||||||||||| | || |||||||||||||||||||| || ||| | ||| |||    
T  3438617 gaggagcttttctctatgcaatttttcagaccttaattagttgagaaacttgcttcatcggattttcttgattacatcaaaaataccaagttaaatatct 3438518  T
Q  364 cactcttgaggcagctgaaaacaacacttctcactctt 401  Q
    |||| ||||||| | |  | |||||||| |||||||||    
T  3438517 cacttttgaggccgttcgatacaacactgctcactctt 3438480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 224 - 370
Target Start/End: Complemental strand, 44958402 - 44958256
Alignment:
Q  224 tttgttttaacaatatccctagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaaca 323  Q
    |||| |||||||||| | |||||||||||||||| ||||||| |||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||    
T  44958402 tttgctttaacaataacactagaagatggctgcaactatgataggaggagcttttctatctgcaactgttcaaaccttagttgagaaacttgcttcaaca 44958303  T
Q  324 gagtttcttgattacatcaaaaacactaagctcaatgtctcactctt 370  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||    
T  44958302 gagtttcttgattacatcaaaaacaccaagatcaatgtctcactctt 44958256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 243 - 417
Target Start/End: Complemental strand, 146644 - 146470
Alignment:
Q  243 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 342  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| | |||||||||||||  |||||||  |||||||||||    
T  146644 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgcgaaacttgcttcacaagagttttgtgattacatca 146545  T
Q  343 aaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaagttgtgctggatg 417  Q
     |||||| ||||| |||  |||||| |||    || || |||||||||| ||| ||||||| || ||||||||||    
T  146544 gaaacaccaagctgaattcctcactgttggcagagttggaaacaacactgctcgctcttcaggtggtgctggatg 146470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 243 - 355
Target Start/End: Complemental strand, 136593 - 136481
Alignment:
Q  243 tagaagatggctgcagctatgattggaggagcttttctctctgcaactgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatca 342  Q
    ||||||||||||||| || || | ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||  |||||||||||    
T  136593 tagaagatggctgcaactttggtgggaggggcttttctctctgctactgttcagactttagttgagaaacttgcttcacaagagttttgtgattacatca 136494  T
Q  343 aaaacactaagct 355  Q
     |||||| |||||    
T  136493 gaaacaccaagct 136481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 404
Target Start/End: Original strand, 19956981 - 19957146
Alignment:
Q  243 tagaagatggctgcagctatgattggaggagcttttctctctgcaac-tgttcagactttagtagagaaacttgcttcaacagagtttcttgattacatc 341  Q
    |||||||||| |||| ||||||| ||||||||||||||||| ||||| | |||| || ||||| |||||||||||||| || || ||| || |||||||     
T  19956981 tagaagatggttgcaactatgataggaggagcttttctctcagcaacctattcaaaccttagttgagaaacttgcttccacggaatttttttattacata 19957080  T
Q  342 aaaaacacta---agctcaatgtctcactcttgaggcagctgaaaacaacacttctcactcttcaa 404  Q
    ||||| | ||   || | ||| ||||||| ||||||||| | ||||||||||| | ||||||||||    
T  19957081 aaaaaaaatactgagttgaatatctcacttttgaggcagttaaaaacaacactccccactcttcaa 19957146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 401
Target Start/End: Original strand, 29836112 - 29836195
Alignment:
Q  318 tcaacagagtttcttgattacatcaaaaacactaagctcaatgtctcactcttgaggcagctgaaaacaacacttctcactctt 401  Q
    |||||||||||||  |||||| |||| ||||  ||||| |||  ||| ||||||| |||| || ||||||||||||||||||||    
T  29836112 tcaacagagtttcaagattacgtcaacaacatgaagctgaatcactctctcttgaagcagttgcaaacaacacttctcactctt 29836195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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