View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19953_high_10 (Length: 393)
Name: NF19953_high_10
Description: NF19953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19953_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 1092164 - 1092530
Alignment:
| Q |
18 |
gtatgaagtccacaagctgctggctggacatgcaatccctagacacataaagaagttatacagaagtaaattaaagtgagaactgagaatacataataaa |
117 |
Q |
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| T |
1092164 |
gtatgaagtccacaagctgctggctggacatgcaatccctagacacataaagaagttatacagaagtaaattaaagtgagaactgagaatacataataaa |
1092263 |
T |
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| Q |
118 |
aagggaacatttgtcatctatataacataccatatcccatcacaagctatcacaagaaactcatcatctttgcaaagctcaacctatcgcacataaataa |
217 |
Q |
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| T |
1092264 |
aagggaacatttgtcatctatataacataccatatcccatcacaagctatcacaagaaactcatcatctttgcaaagctcaacctatcgcacataaataa |
1092363 |
T |
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| Q |
218 |
aataagtaaacaaattcaaattaaagcgaggaaaatagagaacaaaactatcatggagcatatgaacgatgcccaaatagtataaatcaagttatatatt |
317 |
Q |
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| T |
1092364 |
aataagtaaacaaattcaaattaaagcgaggaaaatagagaacaaaactatcatggagcatatgaacgatgcccaaatagtataaatcaagttatatatt |
1092463 |
T |
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| Q |
318 |
tccaacagaaatannnnnnnnnatcaatatagcaaataaaacagagaataaaaagctacaagtctta |
384 |
Q |
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| T |
1092464 |
tccaacagaaatatatttttttatcaatatagcaaataaaacagagaataaacagctacaagtctta |
1092530 |
T |
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