View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19953_high_20 (Length: 243)
Name: NF19953_high_20
Description: NF19953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19953_high_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 1469963 - 1470162
Alignment:
| Q |
19 |
atcgtaaaattatcataaacatgttgctgtcaatttgtcatatcattttgaagggtgaatatcataacatcattcaaggatgcactactccatcatctat |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1469963 |
atcgtaaaattatcataagcatgttgctgtcaatttgtcatatcattttgaagggtgaatatcataacatcattcaaggatgcactactccatcatctat |
1470062 |
T |
|
| Q |
119 |
aagctatnnnnnnntacgggtatagttggttttttgccggtggttagatggattgagttcttaatcagaaattgctagttaatatgtgtgttaatatgtc |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1470063 |
aagctat-aaaaaatacgggtatagttggttttttgccggtggttagatggattgagttcttaatcagaaattgctagttaata--tgtgttaatatgtc |
1470159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 1458433 - 1458622
Alignment:
| Q |
19 |
atcgtaaaattatcataaacatgttgctgtcaatttgtcatatcattttgaagggtgaatatcataacatcattcaaggatgcactactccatcatctat |
118 |
Q |
| |
|
|||||||| ||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
1458433 |
atcgtaaagttatcataagcatattgctgtcaatttgtcatattatattgaagggtgaatatcataacatcatttaaggatgctctacaacatcatctat |
1458532 |
T |
|
| Q |
119 |
aagctatnnnnnnntacgggtat-agttggttttttgccggtggttagatggattgagttcttaatcagaaattgctagttaatatgtgt |
207 |
Q |
| |
|
|||| || ||||||||| | ||| |||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
1458533 |
aagcaataaaaaaatacgggtataatttgtttttttaccggtggttagatcgattgagttcttaatctgaaattgatagttaatatgtgt |
1458622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University