View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19953_high_7 (Length: 502)
Name: NF19953_high_7
Description: NF19953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19953_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Original strand, 44801358 - 44801805
Alignment:
| Q |
19 |
gtgaggtagtaataagatgtttgtgggacaaagaagaaggtgacgatcgatagacaagtctatgaatatggaagaaggagctgaaggggcgacacagatg |
118 |
Q |
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| T |
44801358 |
gtgaggtagtaataagatgtttgtgggacaaagaagaaggtgacgatcgatagacaagtctatgaatatggaagaaggagctgaaggggcgacacagatg |
44801457 |
T |
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| Q |
119 |
aaagttagggtttctaagtgtttgagagagatggtttcttatgaaagggaccgtgtgaaagtggacnnnnnnnnaccatcacatatgtaagacataaatt |
218 |
Q |
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| T |
44801458 |
aaagttagggtttctaagtgtttgagagagatggtttcttatgaaagggaccgtgtgaaagtggacttttttttaccatcacatatgtaagacataaatt |
44801557 |
T |
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| Q |
219 |
ttactacaatttaattnnnnnnnctatttgcatagtgctcgttgtattttacatattagattggtttagtttgtccggttcactagttcatattctaatc |
318 |
Q |
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| T |
44801558 |
ttactacaatttaattaaaaaaactatttgcatagtgctcgttgtattttacatattagattggtttagtttgtccggttcactagttcat---ctaatc |
44801654 |
T |
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| Q |
319 |
aacttatagccgtagacatttccttgacgctagattttctttcttcctaaaacctacatgagttgtgatgaagcttggtatgcggttaataatgattttg |
418 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44801655 |
aacttatagccgtagacatttccttgacactagattttctttcttcctaaaacctacatgagttgtgatgaagcttggtatgcggt---taatgattttg |
44801751 |
T |
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| Q |
419 |
attttgttaagcttatagttattctagcgacaatttttgtttcaacatatacta |
472 |
Q |
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| T |
44801752 |
attttgttaagcttatagttattctagcgacaatttttgtttcaacatatacta |
44801805 |
T |
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