View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19953_low_13 (Length: 354)
Name: NF19953_low_13
Description: NF19953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19953_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 1469952 - 1469613
Alignment:
| Q |
1 |
ttttgagctttgtaggcatagaagcatgataatcatttatgatcccaatatgcctaataacagaaggataaatgattgtctgaccaatgaaaaatatcaa |
100 |
Q |
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| T |
1469952 |
ttttgagctttgtaggcatagaagcatgataatcatttatgatcccaatatgcctaataacagaaggataaatgattgtctgaccaatgaaaaatatcaa |
1469853 |
T |
|
| Q |
101 |
agatttggatagagaaaagccaaagaatatactattttctggtattttcaca-tnnnnnnnnnnctatttgagcattgggaaaatgaatggttagtcatg |
199 |
Q |
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| T |
1469852 |
agatttggatagagaaatgccaaagaatctactattttctggtattttcacattaaaaaaaaaactatttgagcattgggaaaatgaatggttagtcatg |
1469753 |
T |
|
| Q |
200 |
tgatcttagttt------gtttttatgatctgttatttgatcttgattggggttcttatccttctgccactgcttttttcacacttagaaaataatttga |
293 |
Q |
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| T |
1469752 |
tgatcttagttttgctcagtttttatgatctgttatttgatcttgattggggttcttatccttctgccactgcttttttcacacttagaaaataatttga |
1469653 |
T |
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| Q |
294 |
aaagttatggaagttacttttaaaaaattgcataaataga |
333 |
Q |
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| T |
1469652 |
aaagttatggaagttacttctaaaaaattgcataaataga |
1469613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 1458381 - 1458271
Alignment:
| Q |
164 |
ctatttgagcattgggaaaatgaatggttagtcatgtgatcttagttt------gtttttatgatctgttatttgatcttgattggggttcttatccttc |
257 |
Q |
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| T |
1458381 |
ctatttgagcatttggaaaatgattggttagt---gtcatcttagttttgctcagtttttatgatctgttattttatcttgattaggg-tcttatccttc |
1458286 |
T |
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| Q |
258 |
tgccactgctttttt |
272 |
Q |
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| T |
1458285 |
tgccactgctttttt |
1458271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 312
Target Start/End: Complemental strand, 24364585 - 24364551
Alignment:
| Q |
278 |
ttagaaaataatttgaaaagttatggaagttactt |
312 |
Q |
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| T |
24364585 |
ttagaaaataatttgaaaagttatggaagttactt |
24364551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 49210898 - 49210837
Alignment:
| Q |
16 |
gcatagaagcatgataatcatttatgatcccaatatgcctaataacagaaggataaatgatt |
77 |
Q |
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| T |
49210898 |
gcatagaagcattgtaatcatttatgatctcaatgtgcttaatgacagaaggataaacgatt |
49210837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 22731991 - 22732035
Alignment:
| Q |
73 |
tgattgtctgaccaatgaaaaatatcaaagatttggatagagaaa |
117 |
Q |
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| T |
22731991 |
tgattgcctgaccaatcaaaaatatcaaagattttgatagagaaa |
22732035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 309
Target Start/End: Complemental strand, 19954656 - 19954621
Alignment:
| Q |
274 |
acacttagaaaataatttgaaaagttatggaagtta |
309 |
Q |
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| T |
19954656 |
acacttggaaaataatttgaaaagttatggaagtta |
19954621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 5587561 - 5587517
Alignment:
| Q |
73 |
tgattgtctgaccaatgaaaaatatcaaagatttggatagagaaa |
117 |
Q |
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| T |
5587561 |
tgattgcctgaccaatcaaaaatatcaaagattttgatagagaaa |
5587517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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