View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19953_low_14 (Length: 346)
Name: NF19953_low_14
Description: NF19953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19953_low_14 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 11344265 - 11344610
Alignment:
| Q |
1 |
gaaatgccccactgctacttgtcctgcaaggtccaaacctgaattccacaccaatcaagagtctattataaatatttcttaatatgaattaataaagaaa |
100 |
Q |
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| T |
11344265 |
gaaatgccccactgctacttggcctgcaaggtccaaacctgaattccacaccaatcaagagtctattataaatatttcttaatatgaattaataaagaaa |
11344364 |
T |
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| Q |
101 |
attagttatttattaaaagatgtgttttacctttcatggaagaaagaaagtcttgttcggatatggtagacttctcaagttgctttccaataagtttctc |
200 |
Q |
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| T |
11344365 |
attagttatttattaaaagatgtgttttacctttcatggaagaaagaaaatcttgttcggatatggtagacttctcaagttgctttccaataagtttctc |
11344464 |
T |
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| Q |
201 |
ccatttctgaattagctctctttgagtgaggatgttttctggtggccttagatatattgtcttgttcaatgttcgaggatcatcaattgtcttaattgtg |
300 |
Q |
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| T |
11344465 |
ccatttctcaattagctctctttgagtgaggatgttttctggtggccttatatatattgtcttgttcaatgttcgaggatcatcaattgtcttaattgtg |
11344564 |
T |
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| Q |
301 |
tatgttgcaacatcatcttcatccacataaacaactgccacaaaca |
346 |
Q |
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| T |
11344565 |
tatgttgcaacatcatcttcatccatataaacaactgccacaaaca |
11344610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 121 - 346
Target Start/End: Original strand, 11308258 - 11308483
Alignment:
| Q |
121 |
tgtgttttacctttcatggaagaaagaaagtcttgttcggatatggtagacttctcaagttgctttccaataagtttctcccatttctgaattagctctc |
220 |
Q |
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| T |
11308258 |
tgtgttttacctttcatggaagaaagaaagtcttgttcggatatggtagacttctcaagttgctttccaataattttctcccatttctcaattagctctc |
11308357 |
T |
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| Q |
221 |
tttgagtgaggatgttttctggtggccttagatatattgtcttgttcaatgttcgaggatcatcaattgtcttaattgtgtatgttgcaacatcatcttc |
320 |
Q |
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| T |
11308358 |
tttgagtgaggatgttttctggtggccttatatatattgtcttgttcaatgttcgtggatcatcaattgtcttaattgtgtatgttgcaacatcatcttc |
11308457 |
T |
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| Q |
321 |
atccacataaacaactgccacaaaca |
346 |
Q |
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| T |
11308458 |
atccatataaacaactgccacaaaca |
11308483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11308109 - 11308171
Alignment:
| Q |
1 |
gaaatgccccactgctacttgtcctgcaaggtccaaacctgaattccacaccaatcaagagtc |
63 |
Q |
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| T |
11308109 |
gaaatgccccactcctacttggcttgcaaggtccaaacctaaatttcacaccaatcaagagtc |
11308171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 183 - 323
Target Start/End: Original strand, 30181279 - 30181419
Alignment:
| Q |
183 |
ctttccaataagtttctcccatttctgaattagctctctttgagtgaggatgttttctggtggccttagatatattgtcttgttcaatgttcgaggatca |
282 |
Q |
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| T |
30181279 |
ctttccaataagtttttcccaaattccaataagctctccttgggagagaatgttttcttgtggtctaaggtataatgttttgtttaaggttcgaggatca |
30181378 |
T |
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| Q |
283 |
tcaattgtcttaattgtgtatgttgcaacatcatcttcatc |
323 |
Q |
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| T |
30181379 |
tctattgtcttgattgtatatgttgcaacatcatattcatc |
30181419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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