View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19953_low_15 (Length: 338)
Name: NF19953_low_15
Description: NF19953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19953_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 32266197 - 32265899
Alignment:
| Q |
19 |
gcttaattgcaaaattctcagtttatgccagagggagaatgtttcttatgcaaatgcaacaaaataaaaacataaccaagagtaaaatgcatatgagtat |
118 |
Q |
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| T |
32266197 |
gcttaattgcaaaattctcagtttatgccagagggagaatgtttctgatgcaaatgcaacaaaataaaaacataaccaagagtaaaatgcatatgagtat |
32266098 |
T |
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| Q |
119 |
caacataaccactaattttctcccaaaaatttattgtaattttttgatcaaggaaataaaataagagtgactaatgaatcaagaaggatttgtttgatat |
218 |
Q |
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|||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32266097 |
caacataaccactaattt-ctcccaatttttttttgtaattttttgatcaaggaaataaaataagagtgtctaatgaatcaagaaggatttgtttgatat |
32265999 |
T |
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| Q |
219 |
ttgctcaattaggtttaactttcaacaaagactaaattgagaaaaccgaagcatttcttctcaattcttgtttagagttgacaatttctagtctcacaca |
318 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32265998 |
ttgctcaattaggtttaacttttaacaaagactaaattgagaaaaccgaagcatttcttctcaattcttgtttagagttgacaatttctagtctcacaca |
32265899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 32257380 - 32257188
Alignment:
| Q |
19 |
gcttaattgcaaaattctcagtttatgccagagggagaatgtttcttatgcaaatgcaacaaaataaaaacataaccaagagtaaaatgcatatgagtat |
118 |
Q |
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| T |
32257380 |
gcttaattgcaaaattctcagtttatgccagaggtagaa-------------aatgcaacaaaataaaagcataaccaagagtaaaaggcttatgagtat |
32257294 |
T |
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| Q |
119 |
caa----cataaccactaattttctcccaaaaatttattgtaattttttgatcaaggaaataaaat-aagagtgactaatgaatcaagaaggatttgttt |
213 |
Q |
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| T |
32257293 |
caatcaacataaccactaatttcctcccaaaaatttatagtaattttttgatcaaggaaataaaataaagagtcactaatgaatcaagaaggatttgttt |
32257194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 33179298 - 33179130
Alignment:
| Q |
21 |
ttaattgcaaaattctcagtttatgccagagggagaatgtttcttatgcaaatgcaa----caaaataaaaacataaccaagagtaaaatgcatatgagt |
116 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||| || ||||||| |||||||| ||||||| || ||| ||| |
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| T |
33179298 |
ttaattgcaaacttctcagtttatgccagagggagaatctttcttaatcaaattcaaatgacagaataaaagtataaccaaaagtaaaaagcttatcagt |
33179199 |
T |
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| Q |
117 |
atcaacataaccactaattttctcccaaaaatttattgtaattttttgatcaaggaaataaaataagag |
185 |
Q |
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| T |
33179198 |
atcaacatagccactaatcttctcacaaaaaatttcagtaatattttgataaaggaaataaaattagag |
33179130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 32257075 - 32257020
Alignment:
| Q |
225 |
aattaggtttaactttcaacaaagactaaattgagaaaaccgaagcatttcttctc |
280 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
32257075 |
aattaggtttgactttcaacaaagactaaattgaggaaaccgaagcgtttcttctc |
32257020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 314
Target Start/End: Complemental strand, 33178884 - 33178810
Alignment:
| Q |
240 |
tcaacaaagactaaattgagaaaaccgaagcatttcttctcaattcttgtttagagttgacaatttctagtctca |
314 |
Q |
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||||||||||||||||||| ||||||| ||| |||||||||||||| | || | |||||||||||| |||||||| |
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| T |
33178884 |
tcaacaaagactaaattgacaaaaccggagcgtttcttctcaattcctcttcaaagttgacaatttgtagtctca |
33178810 |
T |
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