View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19953_low_25 (Length: 238)

Name: NF19953_low_25

Description: NF19953

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19953_low_25

[»] chr2 (6 HSPs)

Alignment Details

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 6)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 202; E-Value: 1e-110

Query Start/End: Original strand, 17 - 238

Target Start/End: Complemental strand, 8380006 - 8379785

Alignment:

Q	17	aatgttcatatcataatttctatcattacttcaaaaattttactaagaggctagttttacatgactactatttttacttgtaggtttatacctacagcaa	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|
T	8380006	aatgttcatatcataatttctatcattacttcaagatttttaaaaagaggctagttttacatgactactatttttacttgtaggtttatacctacagcta	8379907	T

Q	117	ctcaaaggaggatgcatgaaattgaaaaagatatagattcttctcttagatatataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactga	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8379906	ctcaaaggaggatgcatgaaattgaaaaagatatagattcttctcttagatatataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactga	8379807	T

Q	217	gaatgacttgttaggtcttctt	238	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8379806	gaatgacttgttaggtcttctt	8379785	T

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Target: chr2; HSP #2

Raw Score: 61; E-Value: 3e-26

Query Start/End: Original strand, 58 - 234

Target Start/End: Original strand, 23767922 - 23768098

Alignment:

Q	58	actaagaggctagttttacatgactactatttttacttgtaggtttatacctacagcaactcaaaggaggatgcatgaaattgaaaaagatatagattct	157	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \| \|\|\| \|\|\|\|\|\| \|\|\| \|\|\| \| \|\|\|\|\| \|\|
T	23767922	actaagatgctagttttacatgactattctttttacttgcaggtttttacctacagctgatcatagaaagataaatgaaaatgataaacaaatagaaact	23768021	T

Q	158	tctcttagatatataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtct	234	Q
		\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	23768022	actattaagaatataattaacaagagggagaaagcaataaaggcaggtgaagccactgagaatgacttattaggtct	23768098	T

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Target: chr2; HSP #3

Raw Score: 57; E-Value: 6e-24

Query Start/End: Original strand, 58 - 234

Target Start/End: Complemental strand, 23784149 - 23783973

Alignment:

Q	58	actaagaggctagttttacatgactactatttttacttgtaggtttatacctacagcaactcaaaggaggatgcatgaaattgaaaaagatatagattct	157	Q
		\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\| \|\| \| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\| \|\|
T	23784149	actaagatgttagttttacatgactattctttttacttgcaggtttttacctaccgctgatcatagaaagataaatgaaaatgaaaaacaaatagaaact	23784050	T

Q	158	tctcttagatatataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtct	234	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	23784049	actcttaagaatataattaacaagagggaaaaagcaattaaggcaggtgaagccactgagaatgacttattaggtct	23783973	T

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Target: chr2; HSP #4

Raw Score: 34; E-Value: 0.0000000003

Query Start/End: Original strand, 58 - 114

Target Start/End: Original strand, 23797099 - 23797156

Alignment:

Q	58	actaagaggctagttttacatgactactatttt-tacttgtaggtttatacctacagc	114	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	23797099	actaagatgctagttttacatgactattcttttttacttgtaggtttttacctacagc	23797156	T

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Target: chr2; HSP #5

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 168 - 238

Target Start/End: Original strand, 30483753 - 30483823

Alignment:

Q	168	atataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttctt	238	Q
		\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|
T	30483753	atattattaacaagagagaaagagaaataaaggcaggtgaagccactaagaatgacttattaggtattctt	30483823	T

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Target: chr2; HSP #6

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 168 - 232

Target Start/End: Original strand, 30468830 - 30468894

Alignment:

Q	168	atataattaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggt	232	Q
		\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\|\|\|\|\|\|\|\|
T	30468830	atatgattaacaacagagaaagagcactaaaggcaggtgaagcaactaaggatgatttgttaggt	30468894	T

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