View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19953_low_28 (Length: 219)
Name: NF19953_low_28
Description: NF19953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19953_low_28 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 37811581 - 37811365
Alignment:
| Q |
3 |
ttcttcgtcttgacgcccagggacgtgaaatagatgtacatggaaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggtcaacattaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37811581 |
ttcttcgtcttgacgcccagggacgtgaaatagatgaacatggaaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggtcaacattaa |
37811482 |
T |
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| Q |
103 |
taaacagaagaaagatgcatttgaaatactaaaacctgtattggatgttaatcctgaatctaatcctcattttgatgaaagaatgggtatcgacaaaaca |
202 |
Q |
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| T |
37811481 |
taaacagaagaaagatgcatttgaaatactaaaacctgtattggatgttaatcctgaatctaatcctcattttgatgaaagaatgggtatcgacaaaaca |
37811382 |
T |
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| Q |
203 |
aagctcctgcggcctaa |
219 |
Q |
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||||||||||||||||| |
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| T |
37811381 |
aagctcctgcggcctaa |
37811365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 3 - 205
Target Start/End: Complemental strand, 17209061 - 17208860
Alignment:
| Q |
3 |
ttcttcgtcttgacgcccagggacgtgaaatagatgtacatggaaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggtcaacattaa |
102 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
17209061 |
ttcttcgtcttgacgcccagggacgtgaaatagatgaacatggaaatgttgttaatgtaactaagccaagcaac-ttagcacattaaaggtcatcattaa |
17208963 |
T |
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| Q |
103 |
taaacagaagaaagatgcatttgaaatactaaaacctgtattggatgttaatcctgaatctaatcctcattttgatgaaagaatgggtatcgacaaaaca |
202 |
Q |
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| T |
17208962 |
taaacataagaaagatgcatttgaaatactaaaacctgtattggatgtcgatcctgaatctaatcctcatttcgacgagagaatgggtatcgacaaaaca |
17208863 |
T |
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| Q |
203 |
aag |
205 |
Q |
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||| |
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| T |
17208862 |
aag |
17208860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 17200125 - 17199985
Alignment:
| Q |
1 |
tgttcttcgtcttgacgcccagggacgtgaaatagatgtacatggaaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggtcaacatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
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| T |
17200125 |
tgttcttcgtcttgacgcccagggacgtgaaatagatgaacatggaaattttgttaatgtaactaagccaagcaaccttagc-------agctcaacatt |
17200033 |
T |
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| Q |
101 |
aataaacagaagaaagatgcatttgaaatactaaaacctgtattggat |
148 |
Q |
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| T |
17200032 |
aataaacataagaaagatgcatttgaaatactaaaacctgtattggat |
17199985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 52355501 - 52355372
Alignment:
| Q |
90 |
aggtcaacattaataaacagaagaaagatgcatttgaaatactaaaacctgtattggatgttaatcctgaatctaatcctcattttgatgaaagaatggg |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
52355501 |
aggtcaacattaataaacagaagaaagatgcatttgaaatactaaaacctgtattggatgtcgatcctgaatctaatcctcattttgatgagagaatggg |
52355402 |
T |
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| Q |
190 |
tatcgacaaaacaaagctcctgcggcctaa |
219 |
Q |
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| T |
52355401 |
tatcgacaaaacaaagctcctgcggcctaa |
52355372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 52355679 - 52355587
Alignment:
| Q |
1 |
tgttcttcgtcttgacgcccagggacgtgaaatagatgtacatggaaatgttgttaatgtaactaagccaagcaaccttagcacattaaaggt |
93 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52355679 |
tgttcttcgtcttgatgcccagggacgtgaaatagatgaacatggaaatgttgttaatgtgactaagccaagcaaccttagcacattaaaggt |
52355587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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