View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19953_low_6 (Length: 580)

Name: NF19953_low_6
Description: NF19953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19953_low_6
NF19953_low_6
[»] chr2 (13 HSPs)
chr2 (79-574)||(8379253-8379733)
chr2 (1-288)||(30394802-30395089)
chr2 (1-285)||(30384368-30384652)
chr2 (1-284)||(30483797-30484080)
chr2 (1-285)||(30424775-30425059)
chr2 (83-290)||(23783706-23783913)
chr2 (63-285)||(30430870-30431092)
chr2 (83-290)||(23768158-23768365)
chr2 (62-285)||(30437124-30437347)
chr2 (62-285)||(30475897-30476120)
chr2 (63-285)||(30468936-30469158)
chr2 (152-239)||(30403917-30404004)
chr2 (341-404)||(8192490-8192553)
[»] chr5 (9 HSPs)
chr5 (104-284)||(41627756-41627936)
chr5 (340-380)||(1827693-1827733)
chr5 (340-380)||(27498894-27498934)
chr5 (337-368)||(12647731-12647762)
chr5 (341-404)||(40330628-40330691)
chr5 (340-413)||(25343233-25343306)
chr5 (340-380)||(12317313-12317353)
chr5 (340-404)||(23270661-23270725)
chr5 (340-372)||(24158311-24158343)
[»] chr1 (7 HSPs)
chr1 (340-402)||(43770105-43770167)
chr1 (340-402)||(1138573-1138635)
chr1 (340-413)||(40802197-40802270)
chr1 (340-384)||(7946838-7946882)
chr1 (341-404)||(24216973-24217036)
chr1 (340-380)||(15059565-15059605)
chr1 (340-380)||(47091684-47091724)
[»] chr7 (4 HSPs)
chr7 (344-404)||(1469114-1469174)
chr7 (340-413)||(7262215-7262288)
chr7 (339-404)||(40332096-40332161)
chr7 (340-372)||(39145823-39145855)
[»] chr4 (5 HSPs)
chr4 (340-413)||(41621726-41621799)
chr4 (362-404)||(13017745-13017787)
chr4 (340-404)||(13771622-13771686)
chr4 (340-372)||(22625241-22625273)
chr4 (340-380)||(52983613-52983653)
[»] chr3 (4 HSPs)
chr3 (340-413)||(4252526-4252599)
chr3 (336-413)||(50731363-50731440)
chr3 (336-413)||(50781414-50781491)
chr3 (358-413)||(26535050-26535105)
[»] chr8 (4 HSPs)
chr8 (101-284)||(15852260-15852443)
chr8 (338-406)||(3794787-3794855)
chr8 (340-402)||(3403643-3403705)
chr8 (339-452)||(26168943-26169052)
[»] scaffold0160 (1 HSPs)
scaffold0160 (357-402)||(29283-29328)
[»] chr6 (1 HSPs)
chr6 (340-404)||(33499468-33499532)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-166; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 79 - 574
Target Start/End: Complemental strand, 8379733 - 8379253
Alignment:
Q  79 ggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttga 178  Q
    ||||||||||||||  ||||||| | |||||||||||| ||| | || |||||||||||| |||||||   | |||||||||||||||||||||||||||    
T  8379733 ggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttggacaatgatattgttga 8379634  T
Q  179 gtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8379633 gtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaaaaaaccagactatgaaggactaaataaacttaagattgt 8379534  T
Q  279 aagtattttaatgtattagctggatcttcttgtattttccctnnnnnnnttgcatcttttgaacccatttgaggttgacctagtggttggcttgaaatct 378  Q
    |||||||||||||||||||||| ||||||||||||||| |||       |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8379533 aagtattttaatgtattagctgtatcttcttgtatttttcctttaaaaattgcatcttttgaacccatttgaggttgacttagtggttggcttgaaatct 8379434  T
Q  379 tgaagtctgttcatctcaaggtctcatgcttgattgattcttcctgatgccaatcttagtgggcaagtccatactctaactttaaatggggcccccacaa 478  Q
    |||||||| ||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||| ||||||| |||| ||||||| |                 
T  8379433 tgaagtctattcatctcaaggtctcaggtttgattgattcctcctgatgccaatctcagtgggcgagtccatgctctgactttaagt------------- 8379347  T
Q  479 aagtgtggtgggattggtatgctcagattaaaaatatataaactttattggactcacttattgatagcatatatcttattgtgacagctccctatg 574  Q
      ||| |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  8379346 --gtgcggtgggattgatccgctcagattaaaaatatataaactttattggactcacttattgatagcataaatctttttgtgacagctccctatg 8379253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 30394802 - 30395089
Alignment:
Q  1 actaagaatgacttattgagtattcttcttgaatcaaatcataaggaaattgaaaataacaacaacaataagagtgttggaatgagtcttgatcatgtag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30394802 actaagaatgacttattgagtattcttcttgaatcaaatcataaggaaattgaaaataacaacaacaataagagtgttggaatgagtcttgatcatgtag 30394901  T
Q  101 tcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttgagtaggtaccctgattggcaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  30394902 tcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttgagtaggtaccctgattggcaaac 30395001  T
Q  201 acgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgtaagtatttta 288  Q
    |||||||||||||||||| |||||  | ||||||||||| |||||||| | ||| || |||||||| || ||||||||||||| ||||    
T  30395002 acgtgctagggaggaagtgttacatgtctttggcaacaaaaaaccagattttgatgggctaaataacctaaagattgtaagtaattta 30395089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 30384368 - 30384652
Alignment:
Q  1 actaagaatgacttattgagtattcttcttgaatcaaatcataaggaaattgaaaataacaacaacaataagagtgttggaatgagtcttgatcatgtag 100  Q
    |||| ||||||||||||||| ||||||||||| |||||||  |||||||||||  | ||  | ||||| |||  ||| ||||||||||||||| ||||||    
T  30384368 actaggaatgacttattgagcattcttcttgagtcaaatcgcaaggaaattgacgaaaatgaaaacaacaaggatgtgggaatgagtcttgatgatgtag 30384467  T
Q  101 tcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttgagtaggtaccctgattggcaaga 200  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
T  30384468 tcgaggaatgcaagttgttccactttgcaggtcaagagactacttcggttttgcttgtttggacaatgatattattgagtaggtaccctgattggcaaac 30384567  T
Q  201 acgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgtaagtatt 285  Q
     ||||| ||||||||||| |||||  | ||||||||||  |||||||| | ||| || |||||||| || ||||| |||||||||    
T  30384568 ccgtgcaagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaaataacctaaagatcgtaagtatt 30384652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 30483797 - 30484080
Alignment:
Q  1 actaagaatgacttattgagtattcttcttgaatcaaatcataaggaaattgaaaataacaacaacaataagagtgttggaatgagtcttgatcatgtag 100  Q
    |||||||||||||||||  ||||||||||||| |||||||| ||||||||| || |||||||||||||||||| ||||||||||| ||||||| |||||     
T  30483797 actaagaatgacttattaggtattcttcttgagtcaaatcacaaggaaattaaagataacaacaacaataagaatgttggaatgaatcttgatgatgtaa 30483896  T
Q  101 tcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttgagtaggtaccctgattggcaaga 200  Q
    || ||||||||||| | ||| |  |||||||| ||||||| ||||| ||||||||||||||||||||  |||| ||||||||| ||||| |||||||||     
T  30483897 tcaaggaatgcaagctattctaccttgcaggggaagaaaccacttcagttttgcttgtttggacaattgtattattgagtaggcaccctaattggcaagc 30483996  T
Q  201 acgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgtaagtat 284  Q
    |||||| || ||||||||  ||||| | |||||||||||  ||||||| | ||||||||||||  | |||||||||||||||||    
T  30483997 acgtgcaagagaggaagtgctacaagtttttggcaacaaacaaccagattttgaaggactaaaccatcttaagattgtaagtat 30484080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 30424775 - 30425059
Alignment:
Q  1 actaagaatgacttattgagtattcttcttgaatcaaatcataaggaaattgaaaataacaacaacaataagagtgttggaatgagtcttgatcatgtag 100  Q
    |||||| ||||||||||  |||| ||| | || |||||||| || ||||| ||| |  ||  ||||||||||| ||||||||||||||||||| |||||     
T  30424775 actaaggatgacttattaggtatacttttagagtcaaatcacaaagaaatggaagaacacggcaacaataagaatgttggaatgagtcttgatgatgtaa 30424874  T
Q  101 tcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttgagtaggtaccctgattggcaaga 200  Q
    | |||||||||||| | ||| | |||||||| ||||| || ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  30424875 tagaggaatgcaagctcttctactttgcaggccaagagaccacttctgttttgcttgtttggacaatggtgttgttgagtaggtaccctgattggcaaga 30424974  T
Q  201 acgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgtaagtatt 285  Q
    |||||| ||||| |||||||||||| | ||||||||||| ||||| |||| ||| || |||| | | |||||||| |||||||||    
T  30424975 acgtgcaagggaagaagtattacaagtttttggcaacaataaacctgactttgacgggctaagtcatcttaagatcgtaagtatt 30425059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 83 - 290
Target Start/End: Complemental strand, 23783913 - 23783706
Alignment:
Q  83 tgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttgagtag 182  Q
    ||||||||||  | ||||||| |||||||| ||| |||||| ||||||||||||| |||||||| | ||||||||||||||| ||| | |||||||||||    
T  23783913 tgagtcttgaagaagtagtcggggaatgcaggttattccatgttgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtag 23783814  T
Q  183 gtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgtaagt 282  Q
    |||||||||||||||||||||||| ||| ||||||||||| | |||||||||||  | ||||| |||| ||| |||||||||||||||||||||||||||    
T  23783813 gtaccctgattggcaagaacgtgcaaggaaggaagtattagagatatttggcaatgaaaaacccgactttgatggactaaataaacttaagattgtaagt 23783714  T
Q  283 attttaat 290  Q
    ||||||||    
T  23783713 attttaat 23783706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 63 - 285
Target Start/End: Original strand, 30430870 - 30431092
Alignment:
Q  63 caacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttgg 162  Q
    ||||||||||| ||||||||||||||||||| ||||| | |||||||||||| | ||| | |||||||| ||||| || ||||| |||||||||||||||    
T  30430870 caacaataagaatgttggaatgagtcttgatgatgtaatagaggaatgcaagctcttctactttgcaggacaagagaccacttctgttttgcttgtttgg 30430969  T
Q  163 acaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaa 262  Q
    |||||| | |||||||||||||| || ||||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||| | ||| || ||||    
T  30430970 acaatggtgttgttgagtaggtaaccagattggcaagaacgtgcaagggaagaagtattacaagtatttggcaacaataaaccagaatttgacgggctaa 30431069  T
Q  263 ataaacttaagattgtaagtatt 285  Q
     | | |||||||| |||||||||    
T  30431070 gtcatcttaagatcgtaagtatt 30431092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 83 - 290
Target Start/End: Original strand, 23768158 - 23768365
Alignment:
Q  83 tgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttgagtag 182  Q
    ||||||||||  | ||||||| |||||||| ||| |||||| ||||||||||||| |||||||| | ||||||||||||||| ||| | |||||||||||    
T  23768158 tgagtcttgaagaagtagtcggggaatgcatgttattccatattgcagggcaagagactacttcagatttgcttgtttggacgatggtgttgttgagtag 23768257  T
Q  183 gtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgtaagt 282  Q
    | |||| |||||||||||||||||  || ||||||||||| | |||||||||||  | |||||||||| ||| |||||||||||||||||||||||||||    
T  23768258 gcacccagattggcaagaacgtgcccggaaggaagtattagagatatttggcaatgaaaaaccagactttgatggactaaataaacttaagattgtaagt 23768357  T
Q  283 attttaat 290  Q
    ||||||||    
T  23768358 attttaat 23768365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 62 - 285
Target Start/End: Original strand, 30437124 - 30437347
Alignment:
Q  62 acaacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttg 161  Q
    |||||||||||| ||||||||||||||||||  ||||| | |||||||||||| | ||| | ||||||||   ||| || ||||| ||||||||||||||    
T  30437124 acaacaataagaatgttggaatgagtcttgacgatgtaatagaggaatgcaagctattctactttgcaggtgcagagacaacttctgttttgcttgtttg 30437223  T
Q  162 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggacta 261  Q
    ||||||  | |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| ||||| || | ||| || |||    
T  30437224 gacaatagtgttgttgagtaggtaccctgattggcaagcacgtgcaagggaggaagtattacaagtatttggcaacaataaacccgattttgatgggcta 30437323  T
Q  262 aataaacttaagattgtaagtatt 285  Q
    | | | ||||||||||||||||||    
T  30437324 agtcatcttaagattgtaagtatt 30437347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 62 - 285
Target Start/End: Original strand, 30475897 - 30476120
Alignment:
Q  62 acaacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttg 161  Q
    |||||||||||  ||| ||||||||||||||  ||||| | || ||||||||| | ||| | |||||||||||||| || ||||| ||||||||||||||    
T  30475897 acaacaataaggatgtcggaatgagtcttgacgatgtaatagaagaatgcaagctattctactttgcagggcaagagaccacttctgttttgcttgtttg 30475996  T
Q  162 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggacta 261  Q
    | ||||||| |||||||||||||| |||||||||||||  ||||| |||||||||||||| ||| | || ||||| || |||||||| | ||| ||||||    
T  30475997 ggcaatgatgttgttgagtaggtatcctgattggcaagctcgtgcaagggaggaagtattgcaagtcttcggcaataaaaaaccagattttgatggacta 30476096  T
Q  262 aataaacttaagattgtaagtatt 285  Q
    ||  ||||||||||||||||||||    
T  30476097 aaccaacttaagattgtaagtatt 30476120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 63 - 285
Target Start/End: Original strand, 30468936 - 30469158
Alignment:
Q  63 caacaataagagtgttggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttgg 162  Q
    ||||||||||  ||| ||||||||||||||| ||||  | |||||||||||| | ||| | |||||||| ||||| || ||||| |||||||||||||||    
T  30468936 caacaataaggatgtcggaatgagtcttgatgatgtgatagaggaatgcaagctattctactttgcaggccaagagaccacttctgttttgcttgtttgg 30469035  T
Q  163 acaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaa 262  Q
    |||||| | || |||||||||||||| ||||||||||  ||||| ||||| |||||||||||  | ||||||||||| ||||| || | ||| || ||||    
T  30469036 acaatggtgttattgagtaggtaccccgattggcaagcgcgtgcaagggaagaagtattacaggtctttggcaacaataaacctgattttgacgggctaa 30469135  T
Q  263 ataaacttaagattgtaagtatt 285  Q
     | | ||||||||||||||||||    
T  30469136 gtcatcttaagattgtaagtatt 30469158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 30403917 - 30404004
Alignment:
Q  152 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaa 239  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||||| |||||||| || ||| | |||||| ||||    
T  30403917 tgcttgtttggacaatgatattgttgagtagatatcctgattggcaagcacgagctagagaggaagttttgcaagtttttggcgacaa 30404004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 404
Target Start/End: Complemental strand, 8192553 - 8192490
Alignment:
Q  341 acccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 404  Q
    ||||||||| ||||| ||||||||||||||||  |||||| ||| || || |||||||||||||    
T  8192553 acccatttggggttggcctagtggttggcttgggatcttggagtgtgctcctctcaaggtctca 8192490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 8e-38; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 104 - 284
Target Start/End: Complemental strand, 41627936 - 41627756
Alignment:
Q  104 aggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacg 203  Q
    ||||||||||||||||| | |||||||||||||| ||||||||   ||| ||||||||||||||| |||| ||||||||||||||||| ||||||| | |    
T  41627936 aggaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaagcaag 41627837  T
Q  204 tgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgtaagtat 284  Q
     || |||||||||||||||||||| ||||||||||| |||||  | | ||| || ||||||||  | ||||||||||||||    
T  41627836 ggcaagggaggaagtattacaaatctttggcaacaaaaaacctaattttgatgggctaaataacttgaagattgtaagtat 41627756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 1827733 - 1827693
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttg 380  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  1827733 aacccatttggggttgacctagtggttggcttgagatcttg 1827693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 27498934 - 27498894
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttg 380  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  27498934 aacccatttggggttgacctagtggttggcttggaatcttg 27498894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 368
Target Start/End: Original strand, 12647731 - 12647762
Alignment:
Q  337 ttgaacccatttgaggttgacctagtggttgg 368  Q
    ||||||||||||||||||||||||||||||||    
T  12647731 ttgaacccatttgaggttgacctagtggttgg 12647762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 40330628 - 40330691
Alignment:
Q  341 acccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 404  Q
    ||||||||||||||| | |||||||| |||||| |||||| ||| || || |||||||||||||    
T  40330628 acccatttgaggttggcttagtggttagcttgagatcttggagtttgctcctctcaaggtctca 40330691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 25343233 - 25343306
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 413  Q
    |||||||||| ||||| ||||||||||| |||||||||||| | | || || | ||||||||||| | ||||||    
T  25343233 aacccatttggggttggcctagtggttgacttgaaatcttggattgtgctcttttcaaggtctcaagtttgatt 25343306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 12317353 - 12317313
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttg 380  Q
    |||||||||| ||||| |||||||||||||||| |||||||    
T  12317353 aacccatttggggttggcctagtggttggcttggaatcttg 12317313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 23270725 - 23270661
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 404  Q
    |||||||||| ||||| ||||||||||||||||  |||||| ||| || |||||  |||||||||    
T  23270725 aacccatttggggttggcctagtggttggcttgggatcttggagtttgctcatccaaaggtctca 23270661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 24158343 - 24158311
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttg 372  Q
    |||||||||||||||||||||||| ||||||||    
T  24158343 aacccatttgaggttgacctagtgattggcttg 24158311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 43770167 - 43770105
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 402  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||| ||||    
T  43770167 aacccatttgtggttgatctagtggttggcttgaaatcttggagtttgttcatctcaaagtct 43770105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 340 - 402
Target Start/End: Original strand, 1138573 - 1138635
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 402  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||| || || |||||||||||    
T  1138573 aacccatttggggttgacctagtggttggcttgagatcttggagtgtgctcctctcaaggtct 1138635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 40802270 - 40802197
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 413  Q
    |||||||||| ||||| | | ||||||||||||| || ||| ||| || |||||||||||||||||| ||||||    
T  40802270 aacccatttggggttggctttgtggttggcttgagatattggagtttgctcatctcaaggtctcatgtttgatt 40802197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 7946838 - 7946882
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagt 384  Q
    |||||||||| ||| ||||||||||||||||||| ||||||||||    
T  7946838 aacccatttggggtcgacctagtggttggcttgagatcttgaagt 7946882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 24216973 - 24217036
Alignment:
Q  341 acccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 404  Q
    ||||||||| ||||||||||||||||| ||||  |||||| ||| || || |||||||||||||    
T  24216973 acccatttggggttgacctagtggttgacttgggatcttggagtgtgctcctctcaaggtctca 24217036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 15059605 - 15059565
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttg 380  Q
    |||||||||| ||||| |||||||||||||||| |||||||    
T  15059605 aacccatttggggttggcctagtggttggcttggaatcttg 15059565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 47091684 - 47091724
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttg 380  Q
    |||||||||| ||||| ||||||||||||||||| ||||||    
T  47091684 aacccatttggggttggcctagtggttggcttgagatcttg 47091724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 1469114 - 1469174
Alignment:
Q  344 catttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 404  Q
    |||||| ||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||    
T  1469114 catttggggttggcctagtggttgacttgaaatcttggagtttgttcatctcaaggtctca 1469174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 413
Target Start/End: Original strand, 7262215 - 7262288
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 413  Q
    |||| ||||||||||||| ||||||||| ||||  |||||| ||| || || ||||||||||||| | ||||||    
T  7262215 aacctatttgaggttgacttagtggttgacttgtgatcttgtagtgtgatcctctcaaggtctcaagtttgatt 7262288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 40332096 - 40332161
Alignment:
Q  339 gaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 404  Q
    |||||||||||  ||||  ||||||||||||||||||||||| ||| || || ||| |||||||||    
T  40332096 gaacccatttggagttggtctagtggttggcttgaaatcttggagtttgctcctctaaaggtctca 40332161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 39145855 - 39145823
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttg 372  Q
    |||||||||||||||||||||||||||| ||||    
T  39145855 aacccatttgaggttgacctagtggttgacttg 39145823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 41621799 - 41621726
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 413  Q
    |||||||||| ||||| |||| |||||||||||| |||||| ||| || || ||||||||||||||| ||||||    
T  41621799 aacccatttggggttggcctaatggttggcttgagatcttggagtttgctcctctcaaggtctcatgtttgatt 41621726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 404
Target Start/End: Original strand, 13017745 - 13017787
Alignment:
Q  362 tggttggcttgaaatcttgaagtctgttcatctcaaggtctca 404  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||    
T  13017745 tggttggcttggaatcttgaagtgtgttcctctcaaggtctca 13017787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 13771686 - 13771622
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 404  Q
    |||||||||| |||||  ||  |||||||||||  |||||||||| || ||||||||||||||||    
T  13771686 aacccatttggggttggtctgatggttggcttgggatcttgaagtttgctcatctcaaggtctca 13771622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 22625273 - 22625241
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttg 372  Q
    |||||||||||||||| ||||||||||||||||    
T  22625273 aacccatttgaggttggcctagtggttggcttg 22625241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 380
Target Start/End: Original strand, 52983613 - 52983653
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttg 380  Q
    |||||||||| ||||| ||||||||||||||||| ||||||    
T  52983613 aacccatttggggttggcctagtggttggcttgagatcttg 52983653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 4252599 - 4252526
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 413  Q
    |||||||||| ||||| ||||||||||||||||| |||||| ||| || || ||||||||||||| | ||||||    
T  4252599 aacccatttggggttggcctagtggttggcttgagatcttggagtgtgctcctctcaaggtctcaagtttgatt 4252526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 413
Target Start/End: Complemental strand, 50731440 - 50731363
Alignment:
Q  336 tttgaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 413  Q
    |||||| |||||||  || ||||||||||||| ||||| |||||||||| || || ||||||||||||| | ||||||    
T  50731440 tttgaatccatttggtgtcgacctagtggttgacttgagatcttgaagtgtgctcctctcaaggtctcaagtttgatt 50731363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 336 - 413
Target Start/End: Original strand, 50781414 - 50781491
Alignment:
Q  336 tttgaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 413  Q
    |||||| |||||||  || ||||||||||||| ||||| |||||||||| || || ||||||||||||| | ||||||    
T  50781414 tttgaatccatttggtgtcgacctagtggttgacttgagatcttgaagtgtgctcctctcaaggtctcaagtttgatt 50781491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 413
Target Start/End: Original strand, 26535050 - 26535105
Alignment:
Q  358 ctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 413  Q
    |||||||||| ||||| || ||||||| ||||||||||||||| ||||| ||||||    
T  26535050 ctagtggttgacttgagattttgaagtgtgttcatctcaaggtttcatgtttgatt 26535105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 101 - 284
Target Start/End: Complemental strand, 15852443 - 15852260
Alignment:
Q  101 tcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttgagtaggtaccctgattggcaaga 200  Q
    |||| |||||||| |||||  | || ||||||||||| || |||||   |||||| |||||||||||| | || ||  | ||||| ||||| ||||||||    
T  15852443 tcgatgaatgcaaattgttttacttggcagggcaagagaccacttcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaaga 15852344  T
Q  201 acgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgtaagtat 284  Q
    |||||| ||| ||||||| || ||| | ||||| ||| | || ||| |||  |||||||||| | ||||||| |||||| ||||    
T  15852343 acgtgcaaggcaggaagttttgcaagtttttgggaaccaaaatccaaacttcgaaggactaagtcaacttaaaattgtacgtat 15852260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 406
Target Start/End: Original strand, 3794787 - 3794855
Alignment:
Q  338 tgaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatg 406  Q
    |||| ||||||| |||||||||| ||||||||||   |||||||||| || || |||||||||||||||    
T  3794787 tgaatccatttgtggttgacctaatggttggcttaggatcttgaagtttgctcctctcaaggtctcatg 3794855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 402
Target Start/End: Complemental strand, 3403705 - 3403643
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 402  Q
    |||||||||||||||| ||| | ||||||| ||| |||||| ||| || ||||||||||||||    
T  3403705 aacccatttgaggttggccttggggttggcctgagatcttggagtttgctcatctcaaggtct 3403643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 452
Target Start/End: Complemental strand, 26169052 - 26168943
Alignment:
Q  339 gaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgattgattcttcctgatgccaatcttagt 438  Q
    ||||||||||  ||||| |||||||||| |||||  |||||| ||| || || |||||||||||||     | ||||||| ||||||||||||| |  ||    
T  26169052 gaacccatttagggttggcctagtggtttgcttgggatcttggagtttgctcctctcaaggtctca----ggtttgattcctcctgatgccaatttcggt 26168957  T
Q  439 gggcaagtccatac 452  Q
    |||||||| |||||    
T  26168956 gggcaagttcatac 26168943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 29328 - 29283
Alignment:
Q  357 cctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 402  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||    
T  29328 cctagtggttggcttggaatcttgaagtgtgttcctctcaaggtct 29283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 404
Target Start/End: Original strand, 33499468 - 33499532
Alignment:
Q  340 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 404  Q
    |||||||||| ||||| ||| ||||||||||||  |||||| ||| || || |||||||||||||    
T  33499468 aacccatttggggttggcctggtggttggcttgggatcttggagtttgctcctctcaaggtctca 33499532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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