View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19953_low_8 (Length: 548)
Name: NF19953_low_8
Description: NF19953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19953_low_8 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 4 - 532
Target Start/End: Complemental strand, 45243192 - 45242661
Alignment:
| Q |
4 |
ataactgcattttattagaggtcaaatcgaatcaactttttgtatcgtttgtttatgtacatatttttacatgattttgaaaatgactgcatgttgaatt |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45243192 |
ataactgcattttattagaggtcaaatcgaatcaactttttgtgtcgtttgtttatgtacatatttttacatgattttgaaaatgactgcatgttgaatt |
45243093 |
T |
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| Q |
104 |
tcgaaagaaacaataaagagtgtatgttttgtgtgtgacgaagaaaagcattaagctagacaacaattcattttcatataaatttagttaaagaaagaat |
203 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45243092 |
tcgaaagaaacaataaagagtgtatgttgtgtgtgtgacgaagaaaagcattaagctagacaacaattcattttcatataaatttagttaaagaaagaac |
45242993 |
T |
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| Q |
204 |
ctcgatatgaattgannnnnnnncctcttcgttattttatatatcctcactcctaaatcatcattttgacgagcttatctctgagttgagactattccac |
303 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45242992 |
ctcgatatgaattgattttttttcctcttcgttattttatatatcctcactcctaaatcatcattttgacgagcttatttctgagttgagactattccac |
45242893 |
T |
|
| Q |
304 |
cctgctgtggtatccgtgtataagaaaaatgttgtttagaaatttgtgtatagtgaaattcctccagattaatgtacagttcctgtttaaaatgggttgc |
403 |
Q |
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| T |
45242892 |
cctgctgtggtatccgtgtataagaaaaatgttgtttagaaatttgtgtatagtgaaattcctccagattaatgtacagttcctgtttaaaatgggttgc |
45242793 |
T |
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| Q |
404 |
tgc---tgctgtttatatctatattcttatgtgatattgttgaggttactagcatgagaatcatattttattttactaggatgacttcttattccaggga |
500 |
Q |
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| T |
45242792 |
tgctgttgttgtttatatctatattcttatgtgatattgttgaggttactagcatgagattcatattttattttactaggatgacttcttgttccaggga |
45242693 |
T |
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| Q |
501 |
tttaaattgacattgaaagagagccaaggaag |
532 |
Q |
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| T |
45242692 |
tttaaattgacattgaaagagagccaaggaag |
45242661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 2058 - 2000
Alignment:
| Q |
252 |
actcctaaatcatcattttgacgagcttatctctga--gttgagactattccaccctgc |
308 |
Q |
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| T |
2058 |
actcctaaataattattttgaccagcttatttctgaatgttgagactattccaccctgc |
2000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 8580177 - 8580242
Alignment:
| Q |
153 |
attaagctagacaacaattcattttcatataaatttagttaaagaaagaatctcgatatgaattga |
218 |
Q |
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| T |
8580177 |
attaagttagacaatgatccattttcttataaattaggttaaagaaagaatatcaatatgaattga |
8580242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 9061857 - 9061925
Alignment:
| Q |
250 |
tcactcctaaatcatcattttgacgagcttatctctga--gttgagactattccaccctgctgtggtat |
316 |
Q |
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| T |
9061857 |
tcactcctaaataattattttggccaacttatttctgaatgtggagactattccaccctgctgtggtat |
9061925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 61
Target Start/End: Original strand, 8576878 - 8576934
Alignment:
| Q |
6 |
aactgcattttattagaggtcaaatcgaatcaacttt-ttgtatcgtttgtttatgt |
61 |
Q |
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| T |
8576878 |
aactgcattttgttagaggtcaaattgaatcacctttcttgtgtagtttgtttatgt |
8576934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 316
Target Start/End: Complemental strand, 9315536 - 9315508
Alignment:
| Q |
288 |
gttgagactattccaccctgctgtggtat |
316 |
Q |
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| T |
9315536 |
gttgagactattccaccctgctgtggtat |
9315508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 12019601 - 12019637
Alignment:
| Q |
288 |
gttgagactattccaccctgctgtggtatccgtgtat |
324 |
Q |
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| T |
12019601 |
gttgagactattccaccctgttgtggtatctgtgtat |
12019637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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