View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19954_high_12 (Length: 361)
Name: NF19954_high_12
Description: NF19954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19954_high_12 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 10 - 361
Target Start/End: Original strand, 46805789 - 46806140
Alignment:
| Q |
10 |
gagatgaagctattaagaaagccgaggaggcagttacagcatccaaggaagtagagaagtcagtggaagatttaactattgaactaatagccacaaaaga |
109 |
Q |
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| T |
46805789 |
gagatgaagctattaagaaagccgaggaggcagttacagcatccaaggaagtagagaagtcagtggaagatttaactattgaactaatagccacaaaaga |
46805888 |
T |
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| Q |
110 |
gtcattagagactgctcatgctgcacacttggaagcagaggaacaaagaataggaacagtcatggcaagagatcaagattcactcaattgggagaaggaa |
209 |
Q |
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| T |
46805889 |
gtcattagagactgctcatgctgcacacttggaagcagaggaacaaagaataggaacagtcatggcaagagatcaagattcactcaattgggagaaggaa |
46805988 |
T |
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| Q |
210 |
cttaaacaggcagaagaagagctccagagaatcaatgagcaaatgttgtctgcaaaggatctcaaatctaaactggaagcagcctctggtttgctgcttg |
309 |
Q |
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| T |
46805989 |
cttaaacaggcagaagaagagctccagagaatcaatgagcaaatgttgtctgcaaaggatctcaaatctaaactggaagcagcctctggtttgctgcttg |
46806088 |
T |
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| Q |
310 |
atttgaaagctaaattaactgtttatatggaatcaaagttaaagcaagaagg |
361 |
Q |
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| T |
46806089 |
atttgaaagctaaattaactgtttatatggaatcaaagttaaagcaagaagg |
46806140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 361
Target Start/End: Complemental strand, 5889088 - 5888742
Alignment:
| Q |
15 |
gaagctattaagaaagccgaggaggcagttacagcatccaaggaagtagagaagtcagtggaagatttaactattgaactaatagccacaaaagagtcat |
114 |
Q |
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| T |
5889088 |
gaagctattgacaaagccgaagatgctgttgctgcatcgaagcaagtagaaaagacggttgaagatttgactattgagttgattgccacaaaagagtctt |
5888989 |
T |
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| Q |
115 |
tagagactgctcatgctgcacacttggaagcagaggaacaaagaataggaacagtcatggcaagagatcaagattcactcaattgggagaaggaacttaa |
214 |
Q |
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| T |
5888988 |
tggaatcagcacattctgcacatatggaagcagaagaacacagaataggaacagtcatggcaagagatcaagattctctcaattgggagagggaactaaa |
5888889 |
T |
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| Q |
215 |
acaggcagaagaagagctccagagaatcaatgagcaaatgttgtctgcaaaggatctcaaatctaaac-tggaagcagcctctggtttgctgcttgattt |
313 |
Q |
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| T |
5888888 |
acaagaagaacaagaactagaaaaactcaatcaaaaaattttgtttgctatggatcttaaatctaaacatagta-aagcttctgcgttgcttcttgattt |
5888790 |
T |
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| Q |
314 |
gaaagctaaattaactgtttatatggaatcaaagttaaagcaagaagg |
361 |
Q |
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| T |
5888789 |
gaaagctgagttaaatgcctatatggaatcaaagtcaaaccaagaagg |
5888742 |
T |
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