View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19954_high_15 (Length: 351)
Name: NF19954_high_15
Description: NF19954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19954_high_15 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 78 - 351
Target Start/End: Original strand, 11591743 - 11592016
Alignment:
| Q |
78 |
caataatcaaacaaaagggacaaatgcctatagatagtagaatcaaaataatgtcatatgtttatggtgacttcgataaaatgattttgttggagctgcc |
177 |
Q |
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| T |
11591743 |
caataatcaaacaaaaaggacaaatgcctatagatagtagaatcaaaataatgtcatatgtttatggtgacttcgataaaatgattttgttgaagctgcc |
11591842 |
T |
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| Q |
178 |
cggccttttgggggcgcctgcctcccatcgaaccagcgattccattcgcaacttaacatggccataatgggtggtagacctacctaatatactaactaac |
277 |
Q |
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| T |
11591843 |
cggctttttgggggtgcccgcctcccctcgaaccagcgattccattcgcaacttaacatggccataatgggtggtagacctacctaatatactaactaac |
11591942 |
T |
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| Q |
278 |
tagtaacatttgtctatttgaaaaactacaaataaatcaaatcctagacaaaattcttaatagactatctatca |
351 |
Q |
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| T |
11591943 |
taataacatttgtctatttgaaaaactacaaataaatcaaatcctagacaaaattcttaatagactatctatca |
11592016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 208 - 351
Target Start/End: Complemental strand, 11646245 - 11646104
Alignment:
| Q |
208 |
aaccagcgattccattcgcaacttaacatggccataatgggtggtagacctacctaatatactaactaactagtaacatttgtctatttgaaaaactaca |
307 |
Q |
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| T |
11646245 |
aaccagcgattccattcgcaacttaacatggccataatgggtggtagacctacctaatatactaactaactagtaacatttttctatttgaaaaactaca |
11646146 |
T |
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| Q |
308 |
aataaatcaaatcctagacaaaattcttaatagactatctatca |
351 |
Q |
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| T |
11646145 |
aataaatcaaatcctagacaaaattctta--agactatctatca |
11646104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 11646377 - 11646246
Alignment:
| Q |
12 |
acagagacttgagagaactctgagattgcaaagagctataaataaaactttcattcctcattttgccaataatcaaacaaaagggacaaatgcctataga |
111 |
Q |
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| T |
11646377 |
acagagacttgagagaact--gagattgcaaagagctataaataaaactttcattcctcattttgccaataatcaaacaaaagggacaaatgcctataga |
11646280 |
T |
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| Q |
112 |
tagtagaatcaaaataatgtcatatgtttatggt |
145 |
Q |
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| T |
11646279 |
tagtagaatcaaaataatgtcatatgtttatggt |
11646246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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