View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19954_high_19 (Length: 310)
Name: NF19954_high_19
Description: NF19954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19954_high_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 23 - 310
Target Start/End: Complemental strand, 38569124 - 38568837
Alignment:
| Q |
23 |
atcatcacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaagtgaccaaggtaacataaaacc |
122 |
Q |
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| T |
38569124 |
atcatgacagtgctcctcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaagtgaccaaggtaacataaaacc |
38569025 |
T |
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| Q |
123 |
atgctacgaaattatattcgttaatgaatgatttctctttttgtcgtagtctagcgtggtaaatcagggagtgtcgtgtccgaacacctgcatatcaaca |
222 |
Q |
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| T |
38569024 |
atgctacgaaattatattcgttaatgaatgatttctctttttgtcgtagtctagcgtggtaaatcggggagtgtcgtgtccgaacacctgcatatcaaca |
38568925 |
T |
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| Q |
223 |
tctttgcagctataccaaacgagctgtacttatgggatgaatgagatttttctttaatttgtagaataaattttcagttacatgatga |
310 |
Q |
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| T |
38568924 |
tctttgcagctataccaaacgagctgtacttatgggatgaatgagatttttctttaatttgtagaataaattttcagttacatgatga |
38568837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 38527695 - 38527615
Alignment:
| Q |
39 |
tcggtcaaatgattcatagtttcggtagtaaccaaactaacaccgaggacattgttgaccaagtgaccaaggtaacataaa |
119 |
Q |
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| T |
38527695 |
tcggtcaaatgattgatagttttggtagtaaccaaagtaacaccaccgatgttgtagaacaagtgtccaaggtatcataaa |
38527615 |
T |
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