View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19954_high_2 (Length: 637)
Name: NF19954_high_2
Description: NF19954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19954_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 16 - 599
Target Start/End: Original strand, 44006259 - 44006837
Alignment:
| Q |
16 |
caaatgttattatgaaagtgatcaattgtcctgtctaaagtaacatgatgattatgtcattacggaaaaaattatttaaccaataaccatgtttatagta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006259 |
caaatgttattatgaaagtgatcaattgtcctgtctaaagtaacatgatgattatgtcattacggaaaaaattatttaaccaataaccatgtttatagta |
44006358 |
T |
|
| Q |
116 |
gccaattatcaatcaagaaaaagtaatcaattgatgtgtgataactcttcattagtaaaa--gtttttcggcatcttttagtgtcatctgcgtatttatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44006359 |
gccaattatcaatcaagaaaaagtaatcaattgatgtgtgataactcttcattagtaaaaaagtttttcggcatcttttagtgtcatctgcgtatttatt |
44006458 |
T |
|
| Q |
214 |
tgttattagtattaccgatttaggnnnnnnnnnnn-gacattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataa |
312 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44006459 |
tgttattagtattaccgatttaggttttttttttttggcattcatcaaagtagtattaatatatggaggaatatagtcaaaaacttggcaactagcataa |
44006558 |
T |
|
| Q |
313 |
aacaatgctgctctagctagaagatgagcaacattgttggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaag |
412 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44006559 |
aacaatgctgctctagctag--------caacattgttggtttgtctccgaataaaacctctccaaaagtttggtaaagaatacaagattgtcgtacaag |
44006650 |
T |
|
| Q |
413 |
ccaataaagtactatcccctctgttctatgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagctt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006651 |
ccaataaagtactatcccctctgttctatgactaggtcttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagctt |
44006750 |
T |
|
| Q |
513 |
atattcataagccacattaaagcttgctttaaacccatgctaccacctctcgaggactcggtttactaacgttccacacaggttctg |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44006751 |
atattcataagccacattaaagcttgctttaaacccatgctaccacctctcgaggactcggtttactaacgttccacacaggttctg |
44006837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 9e-44; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 251 - 523
Target Start/End: Complemental strand, 24152715 - 24152445
Alignment:
| Q |
251 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
350 |
Q |
| |
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||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||| ||| ||| |||||| |
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| T |
24152715 |
cattcatcaaagtagtagtaatacatggaggaatataatcaaagacttggcaactagcataagacaatgc--gactagctagaaggtgaacaatattgtt |
24152618 |
T |
|
| Q |
351 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatccc-ctctgttctatgactaggt |
449 |
Q |
| |
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||||| ||||||| ||||| ||||| |||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| || |||| ||||||| ||| |
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| T |
24152617 |
tgtttgtctccgaagaaaacttatccgaaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactatgttgtatgacttggt |
24152518 |
T |
|
| Q |
450 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag |
523 |
Q |
| |
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| T |
24152517 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataag |
24152445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 251 - 548
Target Start/End: Complemental strand, 24147276 - 24146980
Alignment:
| Q |
251 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
350 |
Q |
| |
|
|||| |||||||||||| |||| ||||||| ||||| ||| | ||||||||||||||| || |||| || | ||||||||||| |||||||||||||| |
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| T |
24147276 |
cattaatcaaagtagtagtaatacatggaggtatataatcagagacttggcaactagcacaagacaacgc--cactagctagaaggtgagcaacattgtt |
24147179 |
T |
|
| Q |
351 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattgtcgtacaagccaataaagtactatccc-ctctgttctatgactaggt |
449 |
Q |
| |
|
||||| ||||||| ||||| ||||| ||||||||||||||||| || | ||| | ||||| ||||| ||||| ||| || |||| ||||||| ||| |
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| T |
24147178 |
tgtttgtctccgaagaaaacttatccgtaagtttggtaaagaatataaaaatgttttgcaagcacataaaatactaccccactttgttgtatgacttggt |
24147079 |
T |
|
| Q |
450 |
cttcccgccatgccatctatgactagtttggaatctagttcaattgacgctttggagaagcttatattcataag-ccacattaaagcttgctttaaaccc |
548 |
Q |
| |
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| |||||||||||| || | || ||||||||||||||||||||| || ||||| |||||| || ||||||||| |||| || ||||||||||| |||| |
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| T |
24147078 |
c-tcccgccatgccgtccacgagtagtttggaatctagttcaataaacactttgcagaagcctaaattcataagaacacagtagagcttgctttagaccc |
24146980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 251 - 403
Target Start/End: Complemental strand, 43228140 - 43227988
Alignment:
| Q |
251 |
cattcatcaaagtagtattaatttatggaggaatatagtcaaaaacttggcaactagcataaaacaatgctgctctagctagaagatgagcaacattgtt |
350 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||||| |||||||||| || ||| | || |||||| |||| |||||||| |||| ||| || |
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| T |
43228140 |
cattcatcaaggtagtaataatatatggaggaatataatcaaaaacttaagaaatagtacaagacaatgtcatactagatagaagatatgcaatattatt |
43228041 |
T |
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| Q |
351 |
ggtttgcctccgaataaaacctatccaaaagtttggtaaagaatacaagattg |
403 |
Q |
| |
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||||| ||||| ||||| ||||| ||||||||||| |||||||||||||| |
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|
| T |
43228040 |
ggtttatctccgtgtaaaatttatccgaaagtttggtatagaatacaagattg |
43227988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 35379011 - 35379060
Alignment:
| Q |
344 |
cattgttggtttgcctccgaataaaacctatccaaaagtttggtaaagaa |
393 |
Q |
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||||||||| || ||| ||||||||||||| || |||||||||||||||| |
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| T |
35379011 |
cattgttggcttaccttcgaataaaacctaacctaaagtttggtaaagaa |
35379060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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