View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19954_high_5 (Length: 475)
Name: NF19954_high_5
Description: NF19954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19954_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 401644 - 402069
Alignment:
| Q |
1 |
caaagtcagaggaagggaattaaaagcccaaatttgttaaatgtttaattacagagacaagcattgtgttgcagaagcagataataaacatcagttgtca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
401644 |
caaagtcagaggaagggaattaaaagcccaaatttgttaaatgtttaattacacagataagcattgtgttgcagaagcagataataaacatcagttgtca |
401743 |
T |
|
| Q |
101 |
cagatatgaaactgaatataggacatcacagccctctcccattccagcacaacagccacatcccatagccataggcgctatattggcaagacttcagagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401744 |
cagatatgaaactgaatataggacatcacagccctctcccattccagcacaacagccacatcccatagccataggcgctatattggcaagacttcagagg |
401843 |
T |
|
| Q |
201 |
tttgttccacctgaaagggttcgaagattgagacctataatgtttcgttgaatgaaatctccgaaaaccagcaaatatttattctggcatctcataaata |
300 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
401844 |
tttgttccatctgaaagggttcgaagattgagacctataatgtttcgttgaatgaaatctccgaaaaccagcaaatatttattctggcatctcataaata |
401943 |
T |
|
| Q |
301 |
caatctcgattttattcccagttaaaccagccggcttcaagcaattgagagagnnnnnnnnggtcttccaacacccttcaaacacagaaaccaattgttt |
400 |
Q |
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||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
401944 |
caatctcgattttatccacagttaaaccagccggcttcaagcaattgagagagttttttttggtcttccaacacccttcaaacacagaaaccaattgttt |
402043 |
T |
|
| Q |
401 |
gggttagcagcctcccagcacaccat |
426 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
402044 |
gggttagcagcctcccagcacaccat |
402069 |
T |
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