View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19954_high_7 (Length: 453)
Name: NF19954_high_7
Description: NF19954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19954_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 40 - 424
Target Start/End: Complemental strand, 38138011 - 38137627
Alignment:
| Q |
40 |
gataccacacaattagtacttatacaaatgaaatataaaaacaatgaaatacaacttcaaacaggatgaaaatataaataccttgttgcagcagcagatc |
139 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38138011 |
gatagcacacaattagtacttatacaaatgaaatataaaaacaatgaaatacaacttcaaacaggatgaaaatataaataccttgttgcagcagcagatc |
38137912 |
T |
|
| Q |
140 |
atttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatga |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38137911 |
atttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatga |
38137812 |
T |
|
| Q |
240 |
cgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagt |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38137811 |
cgagaacagcacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagt |
38137712 |
T |
|
| Q |
340 |
ctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaac |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38137711 |
ctcaaactttgacagagaaatgtcaatagtgatacctctttcacgctcggccttgagcttgtcgagcacccaagcatacttgaac |
38137627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 50 - 423
Target Start/End: Complemental strand, 45983847 - 45983480
Alignment:
| Q |
50 |
aattagtacttatacaaatgaaatataaaaacaatgaaatacaacttcaaacaggatgaaaatataaataccttgttgcagcagcagatcatttggcgca |
149 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||| |||||||| | ||| || |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45983847 |
aattagtacttatataaatgaattataaaaataatcaaatacaatcttaaaggggcggaaaatataaataccttgttgcagcagcagatcatttgattca |
45983748 |
T |
|
| Q |
150 |
caccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatgacgagaacagc |
249 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||||||||| | | ||| || |||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
45983747 |
caccaagagtgaaggcaagaagagcatgttcacgggtctgaccattc-----ata-ccggcttcaaaaccaccagtagtggaatcaatgacgagaacagc |
45983654 |
T |
|
| Q |
250 |
acagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaacttt |
349 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||||| |
|
|
| T |
45983653 |
acagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagttgtacttgtttgtctcaaacttc |
45983554 |
T |
|
| Q |
350 |
gacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaa |
423 |
Q |
| |
|
||||| | ||||||||| || | ||||||||| | || |||||||||||||| |||||||||||||||||||| |
|
|
| T |
45983553 |
gacagggtaatgtcaattgtaacacctctttcacgttcagccttgagcttgtcaagcacccaagcatacttgaa |
45983480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 49 - 423
Target Start/End: Original strand, 43045588 - 43045964
Alignment:
| Q |
49 |
caattagtacttatacaaatgaaatataaaaacaatgaaata--caacttcaaacaggatgaaaatat-aaataccttgttgcagcagcagatcatttgg |
145 |
Q |
| |
|
||||||||||||| | ||||||| |||||||| ||| ||||| ||||||||| || ||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
43045588 |
caattagtacttaaataaatgaattataaaaataatcaaatatacaacttcaagg-ggctgaaaatattaaataccttgttgcaacagcagatcatttgc |
43045686 |
T |
|
| Q |
146 |
cgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatgacgagaa |
245 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||| ||||||||| |||| |||| ||| |||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
43045687 |
ttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaa |
43045786 |
T |
|
| Q |
246 |
cagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaa |
345 |
Q |
| |
|
| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
43045787 |
cggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaa |
43045886 |
T |
|
| Q |
346 |
ctttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaa |
423 |
Q |
| |
|
||| | |||| ||||||||| |||||||||||||| | || |||||||||||||| || ||||| ||||||||||| |
|
|
| T |
43045887 |
cttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaa |
43045964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 50 - 423
Target Start/End: Original strand, 43045136 - 43045511
Alignment:
| Q |
50 |
aattagtacttatacaaatgaaatataaaaacaatgaaata--caacttcaaacaggatgaaaatat-aaataccttgttgcagcagcagatcatttggc |
146 |
Q |
| |
|
|||||||||||| | ||||||| |||||||| ||| ||||| ||||||||| || ||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
43045136 |
aattagtacttaaataaatgaattataaaaataatcaaatatacaacttcaagg-ggctgaaaatattaaataccttgttgcaacagcagatcatttgct |
43045234 |
T |
|
| Q |
147 |
gcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatgacgagaac |
246 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||| ||||||||| |||| |||| ||| |||||||||| |||||| ||||||||||||| |||||| |
|
|
| T |
43045235 |
tcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaac |
43045334 |
T |
|
| Q |
247 |
agcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaac |
346 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
43045335 |
ggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaac |
43045434 |
T |
|
| Q |
347 |
tttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaa |
423 |
Q |
| |
|
|| | |||| ||||||||| |||||||||||||| | || |||||||||||||| || ||||| ||||||||||| |
|
|
| T |
43045435 |
ttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaa |
43045511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 106 - 423
Target Start/End: Complemental strand, 45993577 - 45993260
Alignment:
| Q |
106 |
tgaaaatataaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataa |
205 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||| |||||||||| ||| |||||||||||||||||| |||||||| |||| ||| | |
|
|
| T |
45993577 |
tgaaaatagaaataccttgttgcagcaacagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgagtctgaccatcctttgaaata |
45993478 |
T |
|
| Q |
206 |
ccagcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgg |
305 |
Q |
| |
|
|| |||||||||| || ||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45993477 |
ccggcttcaaaaccacgagtagtggaatcaatgatgagaacagcacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgg |
45993378 |
T |
|
| Q |
306 |
gggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgag |
405 |
Q |
| |
|
||||||||||| ||||||| ||||||| | ||||||||||| |||| |||| ||||||| |||||||||||||| |||| | |||||||||||| || |
|
|
| T |
45993377 |
aggcatcaatgacagtgcagctgtacttgtttgtctcaaacttcgacaaagaactgtcaattgtgatacctctttcacgctcagtcttgagcttgtcaag |
45993278 |
T |
|
| Q |
406 |
cacccaagcatacttgaa |
423 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45993277 |
cacccaagcatacttgaa |
45993260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 49 - 423
Target Start/End: Complemental strand, 43066819 - 43066443
Alignment:
| Q |
49 |
caattagtacttatacaaatgaaatataaaaacaatgaaata--caacttcaaacaggatgaaaatat-aaataccttgttgcagcagcagatcatttgg |
145 |
Q |
| |
|
||||||||||||| | ||||||| |||||||| ||| ||||| |||| |||| || ||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
43066819 |
caattagtacttaaataaatgaattataaaaataataaaatatacaacctcaagg-ggctgaaaatattaaataccttgttgcaacagcagatcatttgc |
43066721 |
T |
|
| Q |
146 |
cgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatgacgagaa |
245 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||| ||||||||| |||| |||| ||| |||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
43066720 |
ttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaa |
43066621 |
T |
|
| Q |
246 |
cagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaa |
345 |
Q |
| |
|
| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
43066620 |
cggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaa |
43066521 |
T |
|
| Q |
346 |
ctttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaa |
423 |
Q |
| |
|
||| | |||| ||||||||| |||||||||||||| | || |||||||||||||| || ||||| ||||||||||| |
|
|
| T |
43066520 |
cttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaagaacccaggcatacttgaa |
43066443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 49 - 423
Target Start/End: Original strand, 43084016 - 43084392
Alignment:
| Q |
49 |
caattagtacttatacaaatgaaatataaaaacaatgaaata--caacttcaaacaggatgaaaatat-aaataccttgttgcagcagcagatcatttgg |
145 |
Q |
| |
|
||||||||||||| | ||||||| |||||||| ||| ||||| |||| |||| || ||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
43084016 |
caattagtacttaaataaatgaattataaaaataataaaatatacaacctcaagg-ggctgaaaatattaaataccttgttgcaacagcagatcatttgc |
43084114 |
T |
|
| Q |
146 |
cgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatgacgagaa |
245 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||| ||||||||| |||| |||| ||| |||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
43084115 |
ttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttcaaaaccaccagtagtggaatcaatgatgagaa |
43084214 |
T |
|
| Q |
246 |
cagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaa |
345 |
Q |
| |
|
| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |
|
|
| T |
43084215 |
cggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaa |
43084314 |
T |
|
| Q |
346 |
ctttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaa |
423 |
Q |
| |
|
||| | |||| ||||||||| |||||||||||||| | || |||||||||||||| || ||||| ||||||||||| |
|
|
| T |
43084315 |
cttccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaa |
43084392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 121 - 423
Target Start/End: Complemental strand, 7888849 - 7888547
Alignment:
| Q |
121 |
cttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaacta |
220 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||| |||| ||||| || ||||||||| ||||||||| |||| | || |||| |||||||||| | |
|
|
| T |
7888849 |
cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca |
7888750 |
T |
|
| Q |
221 |
ccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagag |
320 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7888749 |
ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgtccgggggcatcaatgagag |
7888650 |
T |
|
| Q |
321 |
tgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatactt |
420 |
Q |
| |
|
||||| |||| |||| |||| |||||| | |||||||||||||| |||||||||||||| |||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
7888649 |
tgcagcagtagctggttgtctgaaacttccaaagagaaatgtcaattgtgatacctctttcacgctcagccttgagtttgtcaagcacccaagcatactt |
7888550 |
T |
|
| Q |
421 |
gaa |
423 |
Q |
| |
|
||| |
|
|
| T |
7888549 |
gaa |
7888547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 121 - 423
Target Start/End: Complemental strand, 7891114 - 7890812
Alignment:
| Q |
121 |
cttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaacta |
220 |
Q |
| |
|
|||||| || |||||||||||||| ||||||||| |||||||||| || ||||||||| ||||||||| | || | || ||||||| ||||||| | |
|
|
| T |
7891114 |
cttgttacaacagcagatcatttgtgaaacaccaagagcgaatgcaagttgaacatgttcagtggtctgaccattcttacaaaaaccagcgtcaaaacca |
7891015 |
T |
|
| Q |
221 |
ccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagag |
320 |
Q |
| |
|
||| ||| |||||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7891014 |
ccaagtgtagaatcaatgataagaacagcacagtcagcttcggacgctccagtgatcatgttcttaatgaaatccctgtgtccaggggcatcaatgagag |
7890915 |
T |
|
| Q |
321 |
tgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatactt |
420 |
Q |
| |
|
||||| | | ||||| ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7890914 |
tgcagcggaagttggttgtctcaaacttccacagagaaatgtcaattgtgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatactt |
7890815 |
T |
|
| Q |
421 |
gaa |
423 |
Q |
| |
|
||| |
|
|
| T |
7890814 |
gaa |
7890812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 115 - 423
Target Start/End: Original strand, 3300940 - 3301247
Alignment:
| Q |
115 |
aaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttca |
214 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||||||| ||| ||||||||||| |||||| |||||| || |||| || ||| |||||| |
|
|
| T |
3300940 |
aaataccttgttgcagcaaaa-atcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgatataccggcttca |
3301038 |
T |
|
| Q |
215 |
aaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaa |
314 |
Q |
| |
|
|||| ||| || ||||||||||||| ||||||||||| ||||||||||| || || || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3301039 |
aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaa |
3301138 |
T |
|
| Q |
315 |
tgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagc |
414 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||| |||||| ||||||||| |||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
3301139 |
tgacagtgcagtagtacttagtagtctcaaacttccacagagcaatgtcaattgtgatacctctttcacattcagccttgagcttgtcgagcacccaagc |
3301238 |
T |
|
| Q |
415 |
atacttgaa |
423 |
Q |
| |
|
||||||||| |
|
|
| T |
3301239 |
atacttgaa |
3301247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 77 - 423
Target Start/End: Original strand, 51291793 - 51292132
Alignment:
| Q |
77 |
aaaacaatgaaatacaacttcaaacaggatgaaaatataaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcat |
176 |
Q |
| |
|
|||| ||| ||||||||||| ||| || ||||||||||||||||||||||||||||| || | |||||| || ||||| |||||||| || |
|
|
| T |
51291793 |
aaaagaatcaaatacaactttaaaagggctgaaaatataaataccttgttgcagcagcgtttcct------cacacctaggacgaaggcaagaagcaaat |
51291886 |
T |
|
| Q |
177 |
gttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgat |
276 |
Q |
| |
|
||||| ||||||||| |||| |||||||||||||||||| | |||||||||||||||| || ||||| | |||||||||||||| ||| ||||| ||| |
|
|
| T |
51291887 |
gttcaccggtctgaccatccttagaataaccagcttcaaacccgccagttgtggaatcaaggatgagaataacacagtcagcttggaacggcccggcgat |
51291986 |
T |
|
| Q |
277 |
catgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacct |
376 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| | || |||||||| || |||||||||||||| ||||||||| |
|
|
| T |
51291987 |
catgttcttaatgaaattcccatgtccgggggcatcaatgagagtgcaatagtacttgattgt-tcaaacttggatagagaaatgtcaattgtgatacct |
51292085 |
T |
|
| Q |
377 |
ctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaa |
423 |
Q |
| |
|
||||| |||| ||||||| |||||| ||||||||||||||| |||| |
|
|
| T |
51292086 |
ctttcacgctcagccttgaacttgtcaagcacccaagcatacgtgaa |
51292132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 86 - 423
Target Start/End: Complemental strand, 40034797 - 40034468
Alignment:
| Q |
86 |
aaatacaacttcaaacaggatgaaaatataaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagagg |
185 |
Q |
| |
|
||||||||||| ||| || || |||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| || |
|
|
| T |
40034797 |
aaatacaactttaaaggggctggaaatataaataccttgttgcagcagcagatcatttgattcacaccaagagtataggcaagaagagcatgttcagtgg |
40034698 |
T |
|
| Q |
186 |
tctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttctt |
285 |
Q |
| |
|
||||||| | ||| | |||| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||| ||||| | ||||||||| |
|
|
| T |
40034697 |
tctgaccat--tgata----ccagtctcaaaactaccagttctggaatcaatgatgagaacagcacagtcagctagggacgtgccggttaacatgttctt |
40034604 |
T |
|
| Q |
286 |
aatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgc |
385 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||| ||| ||||| ||||||||||| |||| ||||| ||||| || | ||||||||| || |
|
|
| T |
40034603 |
gatgaaatc--tgtgtccgggggcgtcaatgagagtgcagtggtatttggttgtctcaaacttggacatggaaatatcaattgtaacacctctttcacgc |
40034506 |
T |
|
| Q |
386 |
tcggccttgagcttgtcgagcacccaagcatacttgaa |
423 |
Q |
| |
|
|| |||||||||||||| || ||||||||||||||||| |
|
|
| T |
40034505 |
tcagccttgagcttgtcaagtacccaagcatacttgaa |
40034468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 242 - 422
Target Start/End: Complemental strand, 43076737 - 43076558
Alignment:
| Q |
242 |
agaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtct |
341 |
Q |
| |
|
|||| |||||| ||||||||||||||||| |||||||||||||||||||||| | ||||||| ||| ||||||||| | |||| ||| ||| || |||| |
|
|
| T |
43076737 |
agaagagcacaatcagcttgggacgtcccagtgatcatgttcttaatgaaattcttgtgtcccgggacatcaatgacaacgcagcagttctttgttgtct |
43076638 |
T |
|
| Q |
342 |
caaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatacttga |
422 |
Q |
| |
|
||||||| | |||||||| ||||| || ||||||||||| | || ||| |||||||||| || | ||| |||||||||| |
|
|
| T |
43076637 |
caaacttccagagagaaatctcaatggt-atacctctttcacgttcagccctgagcttgtcaaggatccaggcatacttga |
43076558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 38142194 - 38142228
Alignment:
| Q |
15 |
atcatcaatccatccaaaatattgtgataccacac |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38142194 |
atcatcaatccatccaaaatattgtgataccacac |
38142228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 108 - 423
Target Start/End: Original strand, 34691029 - 34691342
Alignment:
| Q |
108 |
aaaatataaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||||||||||||| |||||||||| | || ||| |||| |
|
|
| T |
34691029 |
aaaatataaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaacc |
34691128 |
T |
|
| Q |
208 |
agcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggg |
307 |
Q |
| |
|
|||| |||| | ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34691129 |
agctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccggga |
34691228 |
T |
|
| Q |
308 |
gcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagca |
407 |
Q |
| |
|
||||||||||||||| || |||||||||| ||||||||||| || |||||||||||| |||||||||||||| |||| || ||||||||||| |||| |
|
|
| T |
34691229 |
gcatcaatgagagtgaagcagtacttggttgtctcaaactt--gcatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagca |
34691326 |
T |
|
| Q |
408 |
cccaagcatacttgaa |
423 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34691327 |
cccaagcatacttgaa |
34691342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 108 - 423
Target Start/End: Original strand, 34713441 - 34713754
Alignment:
| Q |
108 |
aaaatataaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataacc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||||||||||||| |||||||||| | || ||| |||| |
|
|
| T |
34713441 |
aaaatataaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaacc |
34713540 |
T |
|
| Q |
208 |
agcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggg |
307 |
Q |
| |
|
|||| |||| | ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34713541 |
agctcgcaaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccggga |
34713640 |
T |
|
| Q |
308 |
gcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagca |
407 |
Q |
| |
|
||||||||||||||| || |||||||||| ||||||||||| || |||||||||||| |||||||||||||| |||| || ||||||||||| |||| |
|
|
| T |
34713641 |
gcatcaatgagagtgaagcagtacttggttgtctcaaactt--gcatagaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagca |
34713738 |
T |
|
| Q |
408 |
cccaagcatacttgaa |
423 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34713739 |
cccaagcatacttgaa |
34713754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 106 - 423
Target Start/End: Original strand, 16232370 - 16232691
Alignment:
| Q |
106 |
tgaaaatataaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataa |
205 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||| | |||||||||| | | ||||| ||||||||||| |||||||||| |||| ||| || |
|
|
| T |
16232370 |
tgaaaatgtcaataccttgttgcagcagcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaa |
16232469 |
T |
|
| Q |
206 |
ccagcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaa----tgaaatccctgtgt |
301 |
Q |
| |
|
||||||| |||| ||| ||||||| ||||| ||||||||||||||||||| ||| |||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
16232470 |
ccagcttgcaaaccgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccgatgatcatgttcttaattaatgaaatccctgtgt |
16232569 |
T |
|
| Q |
302 |
ccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgt |
401 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
16232570 |
ccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagcttgt |
16232669 |
T |
|
| Q |
402 |
cgagcacccaagcatacttgaa |
423 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
16232670 |
caagcacccaagcatacttgaa |
16232691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 412
Target Start/End: Original strand, 33861039 - 33861342
Alignment:
| Q |
109 |
aaatataaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataacca |
208 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||| ||||||||||| | | || ||||| ||||||||| ||||||||| | || |||| ||||| |
|
|
| T |
33861039 |
aaatagaaataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccatgcttagaaaaacca |
33861138 |
T |
|
| Q |
209 |
gcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggggg |
308 |
Q |
| |
|
||||||||| ||||| | |||||||| || |||| ||| || ||||| | ||| ||||| | |||||||||||||| ||||||||||||| |||| |
|
|
| T |
33861139 |
acttcaaaaccaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatataatccctgtgtccagggg |
33861238 |
T |
|
| Q |
309 |
catcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcac |
408 |
Q |
| |
|
||||||||| |||| | ||||| | | |||||||| || || ||||| |||||| | |||||||||||| |||| |||| ||||||||| || || |
|
|
| T |
33861239 |
catcaatgacagtgtaccggtactggtttgtctcaaaattacgcatagaaacgtcaatggagatacctctttcacgctcagcctcgagcttgtcaagaac |
33861338 |
T |
|
| Q |
409 |
ccaa |
412 |
Q |
| |
|
|||| |
|
|
| T |
33861339 |
ccaa |
33861342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 115 - 420
Target Start/End: Original strand, 4231676 - 4231981
Alignment:
| Q |
115 |
aaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||| ||| ||||| |||||||||||| |||||||| |||| ||| |||||||||| |
|
|
| T |
4231676 |
aaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaagcaaggagagcatgttcacgagtctgaccatccttggaaataccagcttca |
4231775 |
T |
|
| Q |
215 |
aaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaa |
314 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||||| ||||||||||| || || || ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4231776 |
aaaccaccagtggtggaatcaatgatgagaacagcacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaa |
4231875 |
T |
|
| Q |
315 |
tgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagc |
414 |
Q |
| |
|
||| ||||||||||||||| || ||||||||||| |||||| ||||||||| |||||||||||||| |||| |||||||||||||| || |||||||| |
|
|
| T |
4231876 |
tgacagtgcagtagtacttagtggtctcaaacttccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagc |
4231975 |
T |
|
| Q |
415 |
atactt |
420 |
Q |
| |
|
|||||| |
|
|
| T |
4231976 |
atactt |
4231981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 121 - 423
Target Start/End: Original strand, 1846607 - 1846909
Alignment:
| Q |
121 |
cttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaacta |
220 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||| || | ||||| || |||||||| ||||||||| | || | || ||||||||||||||| | |
|
|
| T |
1846607 |
cttgttacagcagcagatcatttgtgaaacaccaagagcgtaggcaagttgaacatgttcattggtctgaccattcttacaaaaaccagcttcaaaacca |
1846706 |
T |
|
| Q |
221 |
ccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagag |
320 |
Q |
| |
|
|||| ||| || ||||||| ||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1846707 |
ccaggtgtagagtcaatgataagaacggcacagtcagcttcggatgctccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagag |
1846806 |
T |
|
| Q |
321 |
tgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatactt |
420 |
Q |
| |
|
||||| | | ||||| ||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1846807 |
tgcagaggaagttggttgtctcaaacttccatagagaaatgtcaattgtgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatactt |
1846906 |
T |
|
| Q |
421 |
gaa |
423 |
Q |
| |
|
||| |
|
|
| T |
1846907 |
gaa |
1846909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 239 - 423
Target Start/End: Original strand, 4620023 - 4620207
Alignment:
| Q |
239 |
acgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtag |
338 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4620023 |
acgagaacagcacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggttg |
4620122 |
T |
|
| Q |
339 |
tctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaa |
423 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||||||||| |||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
4620123 |
tctcaaacttggacagagaaatgtcgattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatatttgaa |
4620207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 50 - 424
Target Start/End: Original strand, 4297620 - 4297991
Alignment:
| Q |
50 |
aattagtacttatacaaatgaaatataaaaacaatgaaatacaacttcaaacaggatgaaaatataaataccttgttgcagcagcagatcatttggcgca |
149 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||| |||||||| | |||| || | |||||| |||||||||||||||||||||||| ||||| | |
|
|
| T |
4297620 |
aattagtatttatacaaatgaattataaaaataatcaaatacaatcttaaacgggctaaaaatacaaataccttgttgcagcagcagataatttgattcg |
4297719 |
T |
|
| Q |
150 |
caccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgt---ggaatcaatgacgagaac |
246 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| |||||||||| | ||| || |||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
4297720 |
caccaagattgaaggcaagaagagcatgttcaaaggtctgaccaatc-----ata-ccggcttcaaaaccaccagtagtagtggaatcaatgacgagaac |
4297813 |
T |
|
| Q |
247 |
agcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaac |
346 |
Q |
| |
|
| |||||| |||| |||||| || ||| |||||||||||||| | ||||| ||||||||||||||||||| | |||||| ||||||| | ||||||||| |
|
|
| T |
4297814 |
atcacagttagctagggacgctccagtggtcatgttcttaatgcattccctatgtccgggggcatcaatgacaatgcagttgtacttgtttgtctcaaac |
4297913 |
T |
|
| Q |
347 |
tttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaac |
424 |
Q |
| |
|
|| ||||||||||||||||| ||| ||||||||| || || || ||||| ||||| || |||||||||||||||||| |
|
|
| T |
4297914 |
ttggacagagaaatgtcaattgtggcacctctttcatggtcagctttgagtttgtcaagtacccaagcatacttgaac |
4297991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 423
Target Start/End: Complemental strand, 4787428 - 4787278
Alignment:
| Q |
273 |
tgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgat |
372 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||| |||||||||| |||||||| ||||||| | ||||||||||| |||| |||||||||||| ||| |
|
|
| T |
4787428 |
tgatcatgttcctaatgtattccctgtgtccgggagcatcaatgacagtgcagttgtacttgtttgtctcaaacttggacatagaaatgtcaattgtggc |
4787329 |
T |
|
| Q |
373 |
acctctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaa |
423 |
Q |
| |
|
||||||||| |||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4787328 |
acctctttcacgctcacccttgagtttgtcaagcacccaagcatacttgaa |
4787278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 4787542 - 4787459
Alignment:
| Q |
109 |
aaatataaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgacc |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||| |
|
|
| T |
4787542 |
aaatataaataccttgttgcagcagcagatcatttgcttcacaccaacagtgaaggcaagaagagcatgttcaagggtctgacc |
4787459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 4619864 - 4619922
Alignment:
| Q |
86 |
aaatacaacttcaaacaggatgaaaatataaataccttgttgcagcagcagatcatttg |
144 |
Q |
| |
|
||||||||||| || || |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4619864 |
aaatacaactttgaaggggctgaaaatataaataccttgttgtagcagcagatcatttg |
4619922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 106 - 423
Target Start/End: Original strand, 16349339 - 16349656
Alignment:
| Q |
106 |
tgaaaatataaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataa |
205 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||| | | ||| | |||||||||||| | ||||||| | | ||| | |
|
|
| T |
16349339 |
tgaaaatatgaataccttgttgcagcagcagatcatttgcttgacaccaagagagtaagcatggagagcatgttcacggatctgaccattattggaaata |
16349438 |
T |
|
| Q |
206 |
ccagcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgg |
305 |
Q |
| |
|
|| ||| |||||| | ||| |||||||||| || |||| |||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
16349439 |
ccggctccaaaaccagcaggagtggaatcaacgataagaagagcacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccgg |
16349538 |
T |
|
| Q |
306 |
gggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtgatacctctttcctgctcggccttgagcttgtcgag |
405 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| |||||||| || ||| |||| ||||||| |||||||||||||| |||| |||||||| ||||| || |
|
|
| T |
16349539 |
gggcatcaatgatagtgcagcggtacttggttgtctcaaaattcaacatagaattgtcaattgtgatacctctttcgcgctcagccttgagtttgtcaag |
16349638 |
T |
|
| Q |
406 |
cacccaagcatacttgaa |
423 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
16349639 |
aacccacgcatacttgaa |
16349656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 161 - 423
Target Start/End: Complemental strand, 7519749 - 7519487
Alignment:
| Q |
161 |
aatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagctt |
260 |
Q |
| |
|
||||||||||||||||| ||| |||||| || |||| ||| |||||||||||||| |||||| ||||| ||||||| || |||||||| ||||| | |
|
|
| T |
7519749 |
aatgcaagaagagcatgctcacgggtctgtccatccttagagataccagcttcaaaaccaccagtggtggagtcaatgataaggacagcacaatcagcct |
7519650 |
T |
|
| Q |
261 |
gggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaat |
360 |
Q |
| |
|
|||| || || || ||||||||||| |||||||| | |||||||| |||||||||| ||||||||||||||||| |||||||| || ||| || ||| |
|
|
| T |
7519649 |
gggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaaagcaat |
7519550 |
T |
|
| Q |
361 |
gtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaa |
423 |
Q |
| |
|
||||| || || |||||||| |||| ||||| |||||||| || ||||| || |||||||| |
|
|
| T |
7519549 |
atcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaa |
7519487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 161 - 423
Target Start/End: Complemental strand, 7529120 - 7528858
Alignment:
| Q |
161 |
aatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttcaaaactaccagttgtggaatcaatgacgagaacagcacagtcagctt |
260 |
Q |
| |
|
|||||||||||||| || ||| |||||| || |||| ||| |||||||||||||| |||||| ||||| ||||||| || || ||||| ||||| | |
|
|
| T |
7529120 |
aatgcaagaagagcgtgctcacgggtctgtccatccttagagataccagcttcaaaaccaccagtggtggagtcaatgataagcacggcacaatcagcct |
7529021 |
T |
|
| Q |
261 |
gggacgtcccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactttgacagagaaat |
360 |
Q |
| |
|
|||| || || || ||||||||||| |||||||| | |||||||| |||||||||| ||||||||||||||||| |||||||| || ||| | ||| |
|
|
| T |
7529020 |
gggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaaggcaat |
7528921 |
T |
|
| Q |
361 |
gtcaatagtgatacctctttcctgctcggccttgagcttgtcgagcacccaagcatacttgaa |
423 |
Q |
| |
|
|| || || || |||||||| |||| ||||| || ||||| || ||||| ||||||||||| |
|
|
| T |
7528920 |
atcgatggtaattcctctttcacgctcagccttaagtttgtcaagaacccatgcatacttgaa |
7528858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 229 - 371
Target Start/End: Complemental strand, 39242300 - 39242152
Alignment:
| Q |
229 |
ggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtgatcatgttcttaatgaa---atccctgtgtccgggggcatca---atgagagtg |
322 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||| | | |||||||| | ||| ||| |||||||| ||| | ||||||| |||| |||| |
|
|
| T |
39242300 |
ggaatcaatgacgagaacaacacagtcaggttgggacgttctgttgatcatggtggtaaggaagaaatccctgtctccagaggcatcatcaatgacagtg |
39242201 |
T |
|
| Q |
323 |
cagtagtacttggtagtctcaaactttgacagagaaatgtcaatagtga |
371 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||| ||||||||| |||| |
|
|
| T |
39242200 |
cagtagtactttgttgtctcaaacttggacagagcaatgtcaattgtga |
39242152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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