View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19955_high_13 (Length: 264)
Name: NF19955_high_13
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 5038211 - 5037965
Alignment:
| Q |
1 |
ttatgctattcaaaataaattcacatcgcagcaatcacaatatgcatcgcaatagtatagtattgtttaaattgatttctattcaccggttttatgtgat |
100 |
Q |
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| T |
5038211 |
ttatgctattcaaaataaattcacaccgcagcaatcacaatatgcatcgcaatagtatagtattgtctaaattgatttctattcaccggttttatgtgat |
5038112 |
T |
|
| Q |
101 |
acaattgataaatggtgggacttttaagtatgtgattagagatttaatttagtatctagaaaaattagtattactttttgtttcaatagagaaaggaatc |
200 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5038111 |
acaattgataaatggtgggac-tttaagcatgtgattagagatttaatttagcatctagaaaaattagtattactttttgtttcaatagagaaaggaatc |
5038013 |
T |
|
| Q |
201 |
catgataattcaaagtttaactaatggtcgtttcaaccatagtacttc |
248 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5038012 |
catgataattcaaagtttaactaatattcgtttcaaccatagtacttc |
5037965 |
T |
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