View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19955_high_3 (Length: 458)
Name: NF19955_high_3
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 9 - 443
Target Start/End: Complemental strand, 41108871 - 41108422
Alignment:
| Q |
9 |
gaagaatatttgaaaagtcacta--ggttgatatataaaaagtttgggaatctagaatccaacctctttctaattgatgccaaccaaaatctaacatctt |
106 |
Q |
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| T |
41108871 |
gaagaatatttgaaaagtcactataggttgatatataaaaagtttgggaatctagaatccaacctctttctaattgatgccaaccaaaatctaacatctt |
41108772 |
T |
|
| Q |
107 |
cttttaatcatcaatcaatttgcttttaattatctatttcgtctttcaagcactagttattgcttattattaagataatgtcaatttcatcttttgatgg |
206 |
Q |
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| T |
41108771 |
cttttaatcatcaatcaatttgcttttaattatctatttcgtctttcaagcactagttattgcttattattaagataatgtcaatttcatcttttgatgg |
41108672 |
T |
|
| Q |
207 |
tcgtgtttacttacttaacttgctttatttttcgatcgctaactgctccctaatcttgctgtcaaataaattataaaatacacaaatgtataccaatttt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108671 |
tcgtgtttacttacttaacttgctttatttttcgatcgctaactgctccctaatcttgctgtcaaataaattataaaatacacaaatgtataccaatttt |
41108572 |
T |
|
| Q |
307 |
gattgtgtgttataacttttttgaccatgggactccaa-------------acttagggtagtaaaggaaagagacattcttctttttgacgttgtaaaa |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41108571 |
gattgtgtgttataacttttttgaccatgggactccaagtctaaacgtctcacttagggtagtaaaggaaagagacattcttctttttgacgttgtaaaa |
41108472 |
T |
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| Q |
394 |
gtaaataccagtccttttaatttctagaagcagtaaaatacctccatttt |
443 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
41108471 |
gtaaatactagtccttttaatttctagaagctgtaaaatacctccatttt |
41108422 |
T |
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