View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19955_high_4 (Length: 438)
Name: NF19955_high_4
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 106 - 425
Target Start/End: Original strand, 49592560 - 49592879
Alignment:
| Q |
106 |
ataagggctattgaagtgagnnnnnnntcgattaccttaggataattattgaagttggtcttaagaacatgttcaacattaacaggatcagcaatgtatg |
205 |
Q |
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| T |
49592560 |
ataagggctattgaagtgagaaaaaaatcgattaccttaggataattattgaagttggtcttaagaacatgttcaacattaacaggatcagcaatgtatg |
49592659 |
T |
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| Q |
206 |
tataagttgtgaacggcatggggaccacaacagttttggacatggaaaaatattggacaagccaatcatgcattctatcatagttcatcaattgttcaat |
305 |
Q |
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| T |
49592660 |
tataagttgtgaacggcatggggaccacaacagttttggacatggaaaaatattggacaagccaatcatgcattctatcatagttcatcaattgttcaat |
49592759 |
T |
|
| Q |
306 |
tgcagctccaagaaatggccaagttttgggtccttttttgttcctttgactccatctatgtaagaatatccatgaaacaatcatgcatatcaatatcact |
405 |
Q |
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| T |
49592760 |
tgcagctccaagaaatggccaagttttgggtccttttttgttcctttgactccatctatgtaagaatatccatgaaacaatcatgcatatcaatatcact |
49592859 |
T |
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| Q |
406 |
aaccctcccatgttgcatct |
425 |
Q |
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| T |
49592860 |
aaccctcccatgttgcatct |
49592879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 49592426 - 49592524
Alignment:
| Q |
12 |
atgaatggtacacttcaccctgcattcataatcacaagtgtttccatcaaaagaatattaacattaaacatgattccacatacacatttgtcccataag |
110 |
Q |
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| T |
49592426 |
atgaatgatacacttcaccctgcattcataatcacaagtatttccatcaaaagattattaacattaaacatgattccacatccacatttgtcccataag |
49592524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 134 - 420
Target Start/End: Complemental strand, 7235463 - 7235177
Alignment:
| Q |
134 |
cgattaccttaggataattattgaagttggtcttaagaacatgttcaacattaacaggatcagcaatgtatgtataagttgtgaacggcatggggaccac |
233 |
Q |
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| T |
7235463 |
cgattacttttgggtaattactgaagttggtcttaagaacatgttcaacattaacaggatcagcaatgtatgtataagttgtgaacggcatggggacaac |
7235364 |
T |
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| Q |
234 |
aacagttttggacatggaaaaatattggacaagccaatcatgcattctatcatagttcatcaattgttcaattgcagctccaagaaatggccaagttttg |
333 |
Q |
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| T |
7235363 |
aacagttttggacatggaaaaatattggacaagccaatcatgcattctatcatagttcatcaattgttcaattgcagctccaagaaatggccaagttttg |
7235264 |
T |
|
| Q |
334 |
ggtccttttttgttcctttgactccatctatgtaagaatatccatgaaacaatcatgcatatcaatatcactaaccctcccatgttg |
420 |
Q |
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| T |
7235263 |
ggtccttttttgttcctttgactccatctatgtaagaatatccatgaaaaaatcatgcatatcaatatcactaaccctcccatgttg |
7235177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 7235619 - 7235564
Alignment:
| Q |
12 |
atgaatggtacacttcaccctgcattcataatcacaagtgtttccatcaaaagaat |
67 |
Q |
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| T |
7235619 |
atgaatggaacacttcaccctgcattcataatcaaatgtattttcatcaaaagaat |
7235564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 362
Target Start/End: Original strand, 8052365 - 8052472
Alignment:
| Q |
256 |
tattggacaagccaatcatgcattctatcatagttcatcaattgttcaattgcagctccaagaaatggccaagttttg-ggtccttttttgttcctttga |
354 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||| | ||| |||||| || | |||||||||||||||| |
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| T |
8052365 |
tatttgacaagccaatcatgcatttcatcatagttcatcaattgttcaatgtcagcttcaagaagggaccatgttttgaggcctttttttgttcctttga |
8052464 |
T |
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| Q |
355 |
ctccatct |
362 |
Q |
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|||||||| |
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| T |
8052465 |
ctccatct |
8052472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 8052313 - 8052365
Alignment:
| Q |
186 |
aacaggatcagcaatgtatgtataagttgtgaacggcatggggaccacaacagt |
239 |
Q |
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| T |
8052313 |
aacaagatcaacaatgta-gtataagttgtgaatggcacggggaccacaacagt |
8052365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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