View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19955_high_5 (Length: 375)
Name: NF19955_high_5
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_high_5 |
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| [»] scaffold0183 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 5 - 359
Target Start/End: Original strand, 13778344 - 13778698
Alignment:
| Q |
5 |
agtgagaagaaaacatgccactgaaaggatttttcgtcctctttctgtagttaaagaaaacttcacaaaagtcgatgccgaaatgacatcgaactttgac |
104 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13778344 |
agtgataagaaaacatgccactgaaaggatttttcgtcctctttctgtagttaaagaaaacttcacaaaagtggatgccgaaatgacatcgaactttgac |
13778443 |
T |
|
| Q |
105 |
agttctggagctgatattgatgttatttgcgttgtgtcaattctcctagtcgaatatgatgtaacatcagaaattactgaggacgagggagatttcactg |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13778444 |
agttctggagctgatattgatgttatttgcgttgtgtcaattctcctagtcgaatatgatgtaacatcagaaattactgaggacgagggagatttcactc |
13778543 |
T |
|
| Q |
205 |
aagagatggcggttcacaaaccactgtgctcttatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaa |
304 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13778544 |
aagagatggcggttcacaaaccactgtgctattatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaa |
13778643 |
T |
|
| Q |
305 |
aagtcatcttaagcctttgtttatccaagctaaaatcaataatgttgggattaac |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13778644 |
aagtcatcttaagcctttgtttatccaagctaaaatcaataatgttgggattaac |
13778698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 24970246 - 24969908
Alignment:
| Q |
12 |
agaaaacatgccactgaaaggatttttcgtcctctttctgtagttaaagaaaacttcacaaaagtcgatgccgaaatgacatcgaactttgacagttctg |
111 |
Q |
| |
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||||||| |||||||||||| |||| || ||||||||| ||||| ||||| | | |||||| |||| ||||||||| ||||||||| ||||| | |
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| T |
24970246 |
agaaaacctgccactgaaagaatttatcctcctctttccgtagtaaaagaggatctagcaaaagatgatgtcgaaatgacgtcgaactttactagttcag |
24970147 |
T |
|
| Q |
112 |
gagctgatattgatgttatttgcgttgtgtcaattctcctagtcgaatatgatgtaacatcagaaattactgaggacgagggagatttcactgaagagat |
211 |
Q |
| |
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||||||| | || || || |||| | |||||||||||| ||| |||||||| |||||||||||||| ||| | ||| |||||||||||||||| || || |
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| T |
24970146 |
aagctgatttcgacgtcatctgcgctctgtcaattctcccagttgaatatgacgtaacatcagaaatcactaaagacaagggagatttcactgaggaaat |
24970047 |
T |
|
| Q |
212 |
ggcggttcacaaaccactgtgctcttatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcat |
311 |
Q |
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| | ||||| ||||||||||||| ||| |||||||| | ||||||||||||||||||||| || |||||| |||||| | |||||||||||||||||||| |
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| T |
24970046 |
gactgttcataaaccactgtgctattacgttatggacaatggttgtgtcgaaggtgaacaagccatgtttaagaaacctaatcatcacatgaaaagtcat |
24969947 |
T |
|
| Q |
312 |
cttaagcctttgtttatccaagctaaaatcaataatgtt |
350 |
Q |
| |
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|| ||||| |||||||||||||||||||||| |||||| |
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| T |
24969946 |
ctcaagcccatgtttatccaagctaaaatcaacaatgtt |
24969908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 353
Target Start/End: Complemental strand, 24969892 - 24969692
Alignment:
| Q |
137 |
tgtgtcaattctcctagtcgaatatgatgtaacatcagaaattactgaggacgagggagatttcactgaagagatggcggttcacaaaccactgtgctct |
236 |
Q |
| |
|
|||||||||||||| | | |||||||| |||| ||||||||| ||| | ||| |||||||||||||||| || ||| | ||||| ||||||||||||| | |
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|
| T |
24969892 |
tgtgtcaattctcccaattgaatatgacgtaaaatcagaaatcactaaagacaagggagatttcactgaggaaatgactgttcataaaccactgtgctat |
24969793 |
T |
|
| Q |
237 |
tatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagcta |
336 |
Q |
| |
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|| |||||||| | |||||||||| | |||||||||| | |||||||||||||||||||||| || | ||||||||||||||| |
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| T |
24969792 |
tacgttatggacaatggttgtgtcca----------------tttgagaaacctaatcatcacatgaaaagtcatctcaaactcatgtttatccaagcta |
24969709 |
T |
|
| Q |
337 |
aaatcaataatgttggg |
353 |
Q |
| |
|
||||||| ||||||||| |
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| T |
24969708 |
aaatcaacaatgttggg |
24969692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0183 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: scaffold0183
Description:
Target: scaffold0183; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 208 - 355
Target Start/End: Complemental strand, 12937 - 12790
Alignment:
| Q |
208 |
agatggcggttcacaaaccactgtgctcttatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaag |
307 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||||||||| |||||||||||||||| ||||||| |||||||||| |
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| T |
12937 |
agatggcggttcacaaaccactatgctattatgttatggataacggttgtgtcaaaggtgaacatgcaatgtttgagaaacctgatcattacatgaaaag |
12838 |
T |
|
| Q |
308 |
tcatcttaagcctttgtttatccaagctaaaatcaataatgttgggat |
355 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
12837 |
tcatcttaagcctttgtttatccaagctaaaatcaatgatattgggat |
12790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0183; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 14717 - 14515
Alignment:
| Q |
11 |
aagaaaacatgccactgaaaggatttttcgtcctctttctgtagttaaagaaaacttcacaaaagtcgatgccgaaatgacatcgaactttgacagttct |
110 |
Q |
| |
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|||||||| | ||||| |||||||||||| || |||||||||| | ||||||||||| ||||||| | || || |||||||||||||| | |||||| |
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| T |
14717 |
aagaaaacctaccactaaaaggatttttcctcatctttctgtaataaaagaaaactttacaaaagagggtgatgacatgacatcgaacttcaatagttct |
14618 |
T |
|
| Q |
111 |
ggagctgatattgatgttatttgcgttgtgtcaattctcctagtcgaatatgatgtaacatcagaaattactgaggacgagggagatttcactgaagaga |
210 |
Q |
| |
|
| | | ||| | |||||||||||||||||||||||| ||| |||||| |||||| |||||||| |||||||||| |||||||||||||||||| |||||| |
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|
| T |
14617 |
gaaccagatttcgatgttatttgcgttgtgtcaattatccaagtcgagtatgatctaacatcataaattactgaagacgagggagatttcactaaagaga |
14518 |
T |
|
| Q |
211 |
tgg |
213 |
Q |
| |
|
||| |
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|
| T |
14517 |
tgg |
14515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 340
Target Start/End: Original strand, 23659978 - 23660082
Alignment:
| Q |
236 |
ttatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagct |
335 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||| | ||||| ||||| || | || |||| |||||||| || ||| || ||||||||||| ||||||||| |
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|
| T |
23659978 |
ttatgtgatggataatggttgtgttgaaggccagcaggctatgttcgaaagacctgattatcacatgcaacatcacctcaagcctttgttcatccaagct |
23660077 |
T |
|
| Q |
336 |
aaaat |
340 |
Q |
| |
|
||||| |
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|
| T |
23660078 |
aaaat |
23660082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 340
Target Start/End: Complemental strand, 23798592 - 23798488
Alignment:
| Q |
236 |
ttatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagct |
335 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||| | ||||| ||||| || | || |||| |||||||| || ||| || ||||||||||| ||||||||| |
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|
| T |
23798592 |
ttatgtgatggataatggttgtgttgaaggccagcaggctatgttcgaaagacctgattatcacatgcaacatcacctcaagcctttgttcatccaagct |
23798493 |
T |
|
| Q |
336 |
aaaat |
340 |
Q |
| |
|
||||| |
|
|
| T |
23798492 |
aaaat |
23798488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 340
Target Start/End: Complemental strand, 22507952 - 22507849
Alignment:
| Q |
237 |
tatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagcta |
336 |
Q |
| |
|
||||||||| ||| | | ||||||||||| |||| || ||||| |||| || |||| |||| ||||| |||||||| || ||| ||||||||||||| | |
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|
| T |
22507952 |
tatgttatgaataattgatgtgtcgaaggccaacatgctatgttcgagagacctgattatcatatgaatagtcatctcaaacctctgtttatccaagcca |
22507853 |
T |
|
| Q |
337 |
aaat |
340 |
Q |
| |
|
|||| |
|
|
| T |
22507852 |
aaat |
22507849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 338
Target Start/End: Original strand, 18454009 - 18454110
Alignment:
| Q |
237 |
tatgttatggatagtggttgtgtcgaaggtgaacaggcaatgtttgagaaacttgatcatcacatgaaaagtcatcttaagcctttgtttatccaagcta |
336 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||| || |||||||||| || |||| | || ||||| | |||||| || ||| |||||||| | |||| |
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|
| T |
18454009 |
tatgttatgaataatggttgtgtcgaaggccaacatgctatgtttgagagacctgattaccatatgaagattcatctcaaacctctgtttatcaaggcta |
18454108 |
T |
|
| Q |
337 |
aa |
338 |
Q |
| |
|
|| |
|
|
| T |
18454109 |
aa |
18454110 |
T |
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