View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19955_low_1 (Length: 722)

Name: NF19955_low_1
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19955_low_1
NF19955_low_1
[»] chr1 (11 HSPs)
chr1 (1-300)||(41546231-41546532)
chr1 (339-706)||(41546615-41546989)
chr1 (1-122)||(26832654-26832775)
chr1 (1-125)||(26785933-26786057)
chr1 (1-125)||(26791673-26791797)
chr1 (1-125)||(26822574-26822698)
chr1 (569-678)||(26817630-26817739)
chr1 (572-678)||(26784597-26784703)
chr1 (572-678)||(26831301-26831407)
chr1 (569-678)||(26790923-26791032)
chr1 (347-388)||(26831705-26831746)
[»] chr7 (2 HSPs)
chr7 (1-122)||(41917455-41917576)
chr7 (578-675)||(41919729-41919826)
[»] chr4 (1 HSPs)
chr4 (558-703)||(20237037-20237182)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 41546231 - 41546532
Alignment:
Q  1 ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41546231 ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcca 41546330  T
Q  101 tctttgatgctgattttcaacctgagtctaactttctttaccgcaccattccattccttgatcaaaatccacaagttggactagttcaagctcgatggca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41546331 tctttgatgctgattttcaacctgagtctaactttctttaccgcaccattccattccttgatcaaaatccacaagttggactagttcaagctcgatggca 41546430  T
Q  201 attcggtaattttttagaccttcatgaaactcttaattat---taattgagattaatgttttatgcattggctgtgtaacatttttacacataaactcaa 297  Q
    |||||||||||||||||||||||||||||||| |||||||   |||||||||||||| | |||||||||| |||||||||||||||||||||||||||||    
T  41546431 attcggtaattttttagaccttcatgaaactcctaattattagtaattgagattaat-tgttatgcattgactgtgtaacatttttacacataaactcaa 41546529  T
Q  298 tca 300  Q
    |||    
T  41546530 tca 41546532  T

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Target: chr1; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 339 - 706
Target Start/End: Original strand, 41546615 - 41546989
Alignment:
Q  339 ttgcagttaatgctgatgaatgcttaatgacaagaatgcaagagatgtcattggactatcatttccttgtggaacaggaagttggttccataacacatgc 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41546615 ttgcagttaatgctgatgaatgcttaatgacaagaatgcaagagatgtcattggactatcatttccttgtggaacaggaagttggttccataactcatgc 41546714  T
Q  439 tttctttggtttcaatggtaaatatcattaaattccctattacagctttgaatatctagtaaat---tgtattagaa----caatcagccatgtgatatt 531  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||| ||||| ||| ||| |   ||||||||||    |||||||||||||||||||    
T  41546715 tttctttggtttcaatggtaaatatcattaaattcccttatacagcttggaataactactaattaactgtattagaattaacaatcagccatgtgatatt 41546814  T
Q  532 annnnnnnnnnnnnnnnnnatggtgcatgcaggtacagctggtgtttggagaatttcagcactaaatgaagctggtggatggaaggaccgcacaacagtg 631  Q
    |                  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41546815 agatgatgatgatggtgatatgatgcatgcaggtacagctggtgtttggagaatttcagcactaaatgaagctggtggatggaaggaccgcacaacagtg 41546914  T
Q  632 gaagatatggacttagcagtaagagccagtctcaaaggatggaaatttgtgtaccttagtgacctcaaggtattt 706  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41546915 gaagatatggacctagcagtaagagccagtctcaaaggatggaaatttgtgtaccttagtgacctcaaggtattt 41546989  T

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Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 26832775 - 26832654
Alignment:
Q  1 ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta 100  Q
    |||||||||||  | ||||| |||||||||||||||||||| |||||  | || || |||||||| ||||||||||| ||||  ||||| ||||||||||    
T  26832775 ataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaaacaatgtgattatgttgcta 26832676  T
Q  101 tctttgatgctgattttcaacc 122  Q
    ||||||||||||||||||||||    
T  26832675 tctttgatgctgattttcaacc 26832654  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 26786057 - 26785933
Alignment:
Q  1 ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta 100  Q
    |||||||||||  | ||||| || |||||||| ||||||||||||||||| || || |||||||| |||||  |||||  ||  ||||| |||||||| |    
T  26786057 ataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgcca 26785958  T
Q  101 tctttgatgctgattttcaacctga 125  Q
    |||||||||||||||||||||||||    
T  26785957 tctttgatgctgattttcaacctga 26785933  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 26791797 - 26791673
Alignment:
Q  1 ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta 100  Q
    |||||||||||  | ||||| || |||||||| ||||||||||||||||| || || |||||||| |||||  |||||  ||  ||||| |||||||| |    
T  26791797 ataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgcca 26791698  T
Q  101 tctttgatgctgattttcaacctga 125  Q
    |||||||||||||||||||||||||    
T  26791697 tctttgatgctgattttcaacctga 26791673  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 26822698 - 26822574
Alignment:
Q  1 ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta 100  Q
    |||||||||||  | ||||| || |||||||| ||||||||||||||||| || || |||||||| |||||  |||||  ||  ||||| |||||||| |    
T  26822698 ataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgtgaatatgttgcca 26822599  T
Q  101 tctttgatgctgattttcaacctga 125  Q
    |||||||||||||||||||||||||    
T  26822598 tctttgatgctgattttcaacctga 26822574  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 569 - 678
Target Start/End: Complemental strand, 26817739 - 26817630
Alignment:
Q  569 gctggtgtttggagaatttcagcactaaatgaagctggtggatggaaggaccgcacaacagtggaagatatggacttagcagtaagagccagtctcaaag 668  Q
    |||||||| ||||||||||||||| | |||||||||||||| ||||| ||  | || ||||| |||||||||||| | || ||| | || |||||  |||    
T  26817739 gctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccacagttgaagatatggacctggctgtacgtgctagtctggaag 26817640  T
Q  669 gatggaaatt 678  Q
    ||||||||||    
T  26817639 gatggaaatt 26817630  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 678
Target Start/End: Complemental strand, 26784703 - 26784597
Alignment:
Q  572 ggtgtttggagaatttcagcactaaatgaagctggtggatggaaggaccgcacaacagtggaagatatggacttagcagtaagagccagtctcaaaggat 671  Q
    ||||| ||||||||||| ||  | |||||||||||||| ||||| ||  | || ||||| |||||||||||  || ||||| | || |||||| ||||||    
T  26784703 ggtgtgtggagaatttcggcgttgaatgaagctggtgggtggaaagataggaccacagttgaagatatggatctatcagtacgtgcaagtctcgaaggat 26784604  T
Q  672 ggaaatt 678  Q
    |||||||    
T  26784603 ggaaatt 26784597  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 678
Target Start/End: Complemental strand, 26831407 - 26831301
Alignment:
Q  572 ggtgtttggagaatttcagcactaaatgaagctggtggatggaaggaccgcacaacagtggaagatatggacttagcagtaagagccagtctcaaaggat 671  Q
    ||||| ||||||||||| ||  | |||||||||||||| ||||| ||  | || || || ||||| ||||| || || ||| | ||||||||||||||||    
T  26831407 ggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgccagtctcaaaggat 26831308  T
Q  672 ggaaatt 678  Q
    |||||||    
T  26831307 ggaaatt 26831301  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 678
Target Start/End: Complemental strand, 26791032 - 26790923
Alignment:
Q  569 gctggtgtttggagaatttcagcactaaatgaagctggtggatggaaggaccgcacaacagtggaagatatggacttagcagtaagagccagtctcaaag 668  Q
    |||||||| ||||||||||| ||  | |||||||| ||||||||||| ||  | || || || ||||| ||||| || || ||| | || ||||||||||    
T  26791032 gctggtgtatggagaatttcggcgttgaatgaagcgggtggatggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgctagtctcaaag 26790933  T
Q  669 gatggaaatt 678  Q
    ||||||||||    
T  26790932 gatggaaatt 26790923  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 347 - 388
Target Start/End: Complemental strand, 26831746 - 26831705
Alignment:
Q  347 aatgctgatgaatgcttaatgacaagaatgcaagagatgtca 388  Q
    ||||| |||||||| ||||||||||| |||||||||||||||    
T  26831746 aatgcggatgaatgtttaatgacaaggatgcaagagatgtca 26831705  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 41917455 - 41917576
Alignment:
Q  1 ataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaaactttgtgactatgttgcta 100  Q
    |||||||||||  | ||||| ||||||||||| |||||||| || ||| | |||||||||||||||||||||||||| || |  |||||  ||||||| |    
T  41917455 ataaagtatgaagttagggacaatagaaatggatacaaagcaggggctttaaaagaaggaatgaagcatagctatgtgaagcaatgtgatcatgttgcaa 41917554  T
Q  101 tctttgatgctgattttcaacc 122  Q
    | ||||||||||||||||||||    
T  41917555 tatttgatgctgattttcaacc 41917576  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 578 - 675
Target Start/End: Original strand, 41919729 - 41919826
Alignment:
Q  578 tggagaatttcagcactaaatgaagctggtggatggaaggaccgcacaacagtggaagatatggacttagcagtaagagccagtctcaaaggatggaa 675  Q
    ||||||||||| || || || || |||||||||||||||||  | || ||||| |||||||||||||| || || ||||| ||||||||||| |||||    
T  41919729 tggagaatttcggcgctgaacgaggctggtggatggaaggataggaccacagttgaagatatggacttggctgttagagctagtctcaaagggtggaa 41919826  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 703
Target Start/End: Complemental strand, 20237182 - 20237037
Alignment:
Q  558 atgcaggtacagctggtgtttggagaatttcagcactaaatgaagctggtggatggaaggaccgcacaacagtggaagatatggacttagcagtaagagc 657  Q
    ||||||| || || ||| ||||||||||| | ||  | |||||||| || |||||||| ||  | |||||||| |||||||||||| | || ||  ||||    
T  20237182 atgcagggacggccggtatttggagaattgctgctatcaatgaagcaggaggatggaaagatagaacaacagttgaagatatggacctcgctgttcgagc 20237083  T
Q  658 cagtctcaaaggatggaaatttgtgtaccttagtgacctcaaggta 703  Q
     ||||| |  |||||||||||| |||||||| | |||||| |||||    
T  20237082 aagtcttaggggatggaaatttttgtaccttggagacctccaggta 20237037  T

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