View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19955_low_10 (Length: 309)

Name: NF19955_low_10
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19955_low_10
NF19955_low_10
[»] chr3 (11 HSPs)
chr3 (197-296)||(1433888-1433987)
chr3 (50-136)||(1434006-1434092)
chr3 (16-46)||(54393443-54393473)
chr3 (17-46)||(9505121-9505150)
chr3 (17-46)||(12710813-12710842)
chr3 (17-46)||(19560774-19560803)
chr3 (17-46)||(25253813-25253842)
chr3 (17-46)||(54432177-54432206)
chr3 (16-44)||(23206310-23206338)
chr3 (17-45)||(26049541-26049569)
chr3 (17-53)||(30743683-30743719)
[»] chr8 (4 HSPs)
chr8 (17-57)||(3308045-3308085)
chr8 (16-47)||(9412523-9412554)
chr8 (16-46)||(453593-453623)
chr8 (17-46)||(39478161-39478190)
[»] chr4 (9 HSPs)
chr4 (16-48)||(48977686-48977718)
chr4 (16-47)||(53369982-53370013)
chr4 (16-46)||(12789552-12789582)
chr4 (17-47)||(22184614-22184644)
chr4 (16-46)||(45674945-45674975)
chr4 (17-46)||(38791802-38791831)
chr4 (17-46)||(43387368-43387397)
chr4 (13-46)||(49821066-49821099)
chr4 (15-47)||(26633045-26633077)
[»] scaffold0316 (1 HSPs)
scaffold0316 (16-47)||(19406-19437)
[»] chr7 (9 HSPs)
chr7 (15-46)||(22075177-22075208)
chr7 (16-46)||(665847-665877)
chr7 (16-46)||(15434320-15434350)
chr7 (17-46)||(222226-222255)
chr7 (17-46)||(33124811-33124840)
chr7 (16-45)||(36927114-36927143)
chr7 (17-45)||(18249994-18250022)
chr7 (15-47)||(33171533-33171565)
chr7 (19-47)||(46573611-46573639)
[»] chr2 (4 HSPs)
chr2 (16-47)||(33831605-33831636)
chr2 (16-46)||(27634781-27634811)
chr2 (17-46)||(3409188-3409217)
chr2 (16-45)||(30713266-30713295)
[»] chr1 (9 HSPs)
chr1 (16-47)||(32179968-32179999)
chr1 (16-47)||(36419211-36419242)
chr1 (16-46)||(7702945-7702975)
chr1 (16-46)||(24469817-24469847)
chr1 (16-46)||(25124885-25124915)
chr1 (16-46)||(35810828-35810858)
chr1 (17-47)||(38061177-38061207)
chr1 (17-46)||(29677519-29677548)
chr1 (17-46)||(44596628-44596657)
[»] chr6 (3 HSPs)
chr6 (16-46)||(5640252-5640282)
chr6 (16-46)||(10961796-10961826)
chr6 (17-46)||(13312135-13312164)
[»] chr5 (7 HSPs)
chr5 (16-46)||(27906208-27906238)
chr5 (17-46)||(3801364-3801393)
chr5 (17-46)||(15933274-15933303)
chr5 (17-46)||(19716289-19716318)
chr5 (17-46)||(27450581-27450610)
chr5 (17-46)||(38522861-38522890)
chr5 (19-47)||(26298424-26298452)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 197 - 296
Target Start/End: Complemental strand, 1433987 - 1433888
Alignment:
Q  197 aaccataaatgaatatatttagatttaattaatcatttttcttctgtagggtttttaccttccatgggctatgttaggtcttgatttgatatttggaaat 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1433987 aaccataaatgaatatatttagatttaattaatcatttttcttctgtagggtttttaccttccatgggctatgttaggtcttgatttgatatttggaaat 1433888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 1434092 - 1434006
Alignment:
Q  50 ccaaccaattagttttaaaaatatctcaactaagtttttaatatttatgcatttaaattaatgtgatgcagcataatgtcactcata 136  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1434092 ccaaccaattagttttaaaaatatctcaactaattttttaatatttatgcatttaaattaatgtggtgcagcataatgtcactcata 1434006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 54393473 - 54393443
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  54393473 atcgagttggttcggttcattgccagcccta 54393443  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 9505150 - 9505121
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  9505150 tcgagttggttcggttcattgccagcccta 9505121  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 12710813 - 12710842
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  12710813 tcgagttggttcggttcattgccagcccta 12710842  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 19560803 - 19560774
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  19560803 tcgagttggttcggttcattgccagcccta 19560774  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 25253813 - 25253842
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  25253813 tcgagttggttcggttcattgccagcccta 25253842  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 54432206 - 54432177
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  54432206 tcgagttggttcggttcattgccagcccta 54432177  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 23206338 - 23206310
Alignment:
Q  16 atcgagttggttcggttcattgccagccc 44  Q
    |||||||||||||||||||||||||||||    
T  23206338 atcgagttggttcggttcattgccagccc 23206310  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 26049569 - 26049541
Alignment:
Q  17 tcgagttggttcggttcattgccagccct 45  Q
    |||||||||||||||||||||||||||||    
T  26049569 tcgagttggttcggttcattgccagccct 26049541  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 30743683 - 30743719
Alignment:
Q  17 tcgagttggttcggttcattgccagccctaaacccaa 53  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  30743683 tcgagttggttcggttcatttccagccctatacccaa 30743719  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 3308045 - 3308085
Alignment:
Q  17 tcgagttggttcggttcattgccagccctaaacccaaccaa 57  Q
    |||||||||||||||||||||||||||||| || |||||||    
T  3308045 tcgagttggttcggttcattgccagccctacactcaaccaa 3308085  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Complemental strand, 9412554 - 9412523
Alignment:
Q  16 atcgagttggttcggttcattgccagccctaa 47  Q
    ||||||||||||||||||||||||||||||||    
T  9412554 atcgagttggttcggttcattgccagccctaa 9412523  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 453593 - 453623
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  453593 atcgagttggttcggttcattgccagcccta 453623  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 39478161 - 39478190
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  39478161 tcgagttggttcggttcattgccagcccta 39478190  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 48977686 - 48977718
Alignment:
Q  16 atcgagttggttcggttcattgccagccctaaa 48  Q
    |||||||||||||||||||||||||||||||||    
T  48977686 atcgagttggttcggttcattgccagccctaaa 48977718  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 53369982 - 53370013
Alignment:
Q  16 atcgagttggttcggttcattgccagccctaa 47  Q
    ||||||||||||||||||||||||||||||||    
T  53369982 atcgagttggttcggttcattgccagccctaa 53370013  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 12789582 - 12789552
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  12789582 atcgagttggttcggttcattgccagcccta 12789552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 22184614 - 22184644
Alignment:
Q  17 tcgagttggttcggttcattgccagccctaa 47  Q
    |||||||||||||||||||||||||||||||    
T  22184614 tcgagttggttcggttcattgccagccctaa 22184644  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 45674945 - 45674975
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  45674945 atcgagttggttcggttcattgccagcccta 45674975  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 38791802 - 38791831
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  38791802 tcgagttggttcggttcattgccagcccta 38791831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 43387368 - 43387397
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  43387368 tcgagttggttcggttcattgccagcccta 43387397  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 49821066 - 49821099
Alignment:
Q  13 aatatcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||| ||||||||    
T  49821066 aatatcgagttggttcggttcattgtcagcccta 49821099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 26633045 - 26633077
Alignment:
Q  15 tatcgagttggttcggttcattgccagccctaa 47  Q
    ||||||||||||||||||||||||| |||||||    
T  26633045 tatcgagttggttcggttcattgccggccctaa 26633077  T

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Target: scaffold0316 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 19406 - 19437
Alignment:
Q  16 atcgagttggttcggttcattgccagccctaa 47  Q
    ||||||||||||||||||||||||||||||||    
T  19406 atcgagttggttcggttcattgccagccctaa 19437  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 22075177 - 22075208
Alignment:
Q  15 tatcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||||    
T  22075177 tatcgagttggttcggttcattgccagcccta 22075208  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 665877 - 665847
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  665877 atcgagttggttcggttcattgccagcccta 665847  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 15434320 - 15434350
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  15434320 atcgagttggttcggttcattgccagcccta 15434350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 222255 - 222226
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  222255 tcgagttggttcggttcattgccagcccta 222226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 33124811 - 33124840
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  33124811 tcgagttggttcggttcattgccagcccta 33124840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 36927114 - 36927143
Alignment:
Q  16 atcgagttggttcggttcattgccagccct 45  Q
    ||||||||||||||||||||||||||||||    
T  36927114 atcgagttggttcggttcattgccagccct 36927143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 18250022 - 18249994
Alignment:
Q  17 tcgagttggttcggttcattgccagccct 45  Q
    |||||||||||||||||||||||||||||    
T  18250022 tcgagttggttcggttcattgccagccct 18249994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 33171565 - 33171533
Alignment:
Q  15 tatcgagttggttcggttcattgccagccctaa 47  Q
    |||||||||||||||| ||||||||||||||||    
T  33171565 tatcgagttggttcggatcattgccagccctaa 33171533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 46573639 - 46573611
Alignment:
Q  19 gagttggttcggttcattgccagccctaa 47  Q
    |||||||||||||||||||||||||||||    
T  46573639 gagttggttcggttcattgccagccctaa 46573611  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 33831605 - 33831636
Alignment:
Q  16 atcgagttggttcggttcattgccagccctaa 47  Q
    ||||||||||||||||||||||||||||||||    
T  33831605 atcgagttggttcggttcattgccagccctaa 33831636  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 27634781 - 27634811
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  27634781 atcgagttggttcggttcattgccagcccta 27634811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 3409217 - 3409188
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  3409217 tcgagttggttcggttcattgccagcccta 3409188  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 45
Target Start/End: Original strand, 30713266 - 30713295
Alignment:
Q  16 atcgagttggttcggttcattgccagccct 45  Q
    ||||||||||||||||||||||||||||||    
T  30713266 atcgagttggttcggttcattgccagccct 30713295  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 32179968 - 32179999
Alignment:
Q  16 atcgagttggttcggttcattgccagccctaa 47  Q
    ||||||||||||||||||||||||||||||||    
T  32179968 atcgagttggttcggttcattgccagccctaa 32179999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 36419211 - 36419242
Alignment:
Q  16 atcgagttggttcggttcattgccagccctaa 47  Q
    ||||||||||||||||||||||||||||||||    
T  36419211 atcgagttggttcggttcattgccagccctaa 36419242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 7702945 - 7702975
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  7702945 atcgagttggttcggttcattgccagcccta 7702975  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 24469847 - 24469817
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  24469847 atcgagttggttcggttcattgccagcccta 24469817  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 25124915 - 25124885
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  25124915 atcgagttggttcggttcattgccagcccta 25124885  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 35810828 - 35810858
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  35810828 atcgagttggttcggttcattgccagcccta 35810858  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 38061207 - 38061177
Alignment:
Q  17 tcgagttggttcggttcattgccagccctaa 47  Q
    |||||||||||||||||||||||||||||||    
T  38061207 tcgagttggttcggttcattgccagccctaa 38061177  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 29677548 - 29677519
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  29677548 tcgagttggttcggttcattgccagcccta 29677519  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 44596628 - 44596657
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  44596628 tcgagttggttcggttcattgccagcccta 44596657  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 5640282 - 5640252
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  5640282 atcgagttggttcggttcattgccagcccta 5640252  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Complemental strand, 10961826 - 10961796
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  10961826 atcgagttggttcggttcattgccagcccta 10961796  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 13312135 - 13312164
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  13312135 tcgagttggttcggttcattgccagcccta 13312164  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 46
Target Start/End: Original strand, 27906208 - 27906238
Alignment:
Q  16 atcgagttggttcggttcattgccagcccta 46  Q
    |||||||||||||||||||||||||||||||    
T  27906208 atcgagttggttcggttcattgccagcccta 27906238  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 3801393 - 3801364
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  3801393 tcgagttggttcggttcattgccagcccta 3801364  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 15933274 - 15933303
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  15933274 tcgagttggttcggttcattgccagcccta 15933303  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 19716289 - 19716318
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  19716289 tcgagttggttcggttcattgccagcccta 19716318  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 27450610 - 27450581
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  27450610 tcgagttggttcggttcattgccagcccta 27450581  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 38522890 - 38522861
Alignment:
Q  17 tcgagttggttcggttcattgccagcccta 46  Q
    ||||||||||||||||||||||||||||||    
T  38522890 tcgagttggttcggttcattgccagcccta 38522861  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 26298424 - 26298452
Alignment:
Q  19 gagttggttcggttcattgccagccctaa 47  Q
    |||||||||||||||||||||||||||||    
T  26298424 gagttggttcggttcattgccagccctaa 26298452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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