View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19955_low_11 (Length: 297)
Name: NF19955_low_11
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 48756540 - 48756815
Alignment:
| Q |
7 |
gaagcataggtttggttcgtctgaagtataggttcggttcgtgaattgtcaaaataggattggttagtttggataactattttgaacaatcctaataaga |
106 |
Q |
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| T |
48756540 |
gaagtataggtttggttcgtctgaagtataggttcggttcgtgaattgtcaaaataggattggttagtttggataactattttgaacaatcctaataaga |
48756639 |
T |
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| Q |
107 |
acacttttttcaacattccgtgtgaatcctacgctttggaaatgtgtcacatataaagtgtcccatgtgaatttcacccaataaacgaggactactagag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48756640 |
acacttttttcaacattccgtgtgaatcctacgctttggaaatgtgtcacatataaagtgtcccatgtgaatttcacccaataaacgaggactactcgag |
48756739 |
T |
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| Q |
207 |
tgttcctaacactgctcataacaacaatagagtttaatttatttttgtccagtttggagcgtttcaaatgatagtt |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48756740 |
tgttcctaacactgctcataacaacaatagagtttaatttatttttgtcctgtttggagcgtttcaaatgatagtt |
48756815 |
T |
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