View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19955_low_13 (Length: 274)

Name: NF19955_low_13
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19955_low_13
NF19955_low_13
[»] chr1 (49 HSPs)
chr1 (5-274)||(37441265-37441535)
chr1 (5-274)||(47602941-47603211)
chr1 (5-270)||(36418896-36419162)
chr1 (5-221)||(24469896-24470113)
chr1 (54-271)||(35309406-35309622)
chr1 (6-147)||(32179777-32179918)
chr1 (9-126)||(7702775-7702892)
chr1 (21-112)||(46265039-46265130)
chr1 (21-112)||(7596347-7596438)
chr1 (21-112)||(23916764-23916855)
chr1 (21-112)||(42916209-42916300)
chr1 (5-109)||(15306450-15306554)
chr1 (5-112)||(19508482-19508589)
chr1 (21-112)||(35810672-35810763)
chr1 (21-112)||(15662903-15662994)
chr1 (21-112)||(40002848-40002939)
chr1 (21-112)||(42937028-42937119)
chr1 (5-110)||(43087545-43087650)
chr1 (21-109)||(31869551-31869639)
chr1 (29-96)||(20349116-20349183)
chr1 (21-112)||(25124980-25125071)
chr1 (21-99)||(39802862-39802940)
chr1 (21-109)||(3577627-3577715)
chr1 (5-109)||(23915676-23915780)
chr1 (11-98)||(13645265-13645352)
chr1 (29-112)||(20347622-20347703)
chr1 (5-112)||(7016154-7016261)
chr1 (21-96)||(45581103-45581178)
chr1 (21-98)||(29677614-29677691)
chr1 (21-98)||(40159725-40159802)
chr1 (29-84)||(11991254-11991309)
chr1 (21-84)||(33233645-33233708)
chr1 (21-84)||(45653526-45653589)
chr1 (21-98)||(8828321-8828398)
chr1 (51-112)||(18349162-18349223)
chr1 (32-109)||(36119029-36119106)
chr1 (21-77)||(14770611-14770667)
chr1 (32-84)||(14796570-14796622)
chr1 (32-84)||(14805444-14805496)
chr1 (29-109)||(20904041-20904121)
chr1 (239-274)||(32179689-32179724)
chr1 (5-56)||(44596527-44596578)
chr1 (28-86)||(27539872-27539930)
chr1 (21-71)||(50447336-50447386)
chr1 (26-84)||(51432303-51432361)
chr1 (21-66)||(5204564-5204609)
chr1 (21-98)||(21680751-21680828)
chr1 (23-112)||(29113622-29113710)
chr1 (31-83)||(48575185-48575237)
[»] chr5 (30 HSPs)
chr5 (5-274)||(27905888-27906159)
chr5 (5-274)||(18879985-18880253)
chr5 (5-274)||(29327824-29328104)
chr5 (63-274)||(22921841-22922053)
chr5 (21-112)||(3801459-3801550)
chr5 (21-112)||(32157032-32157123)
chr5 (21-100)||(38522956-38523035)
chr5 (5-112)||(11136085-11136192)
chr5 (21-112)||(20190679-20190770)
chr5 (5-112)||(31620822-31620929)
chr5 (5-122)||(1840766-1840883)
chr5 (21-105)||(20188934-20189018)
chr5 (5-109)||(26218004-26218108)
chr5 (5-112)||(14500785-14500892)
chr5 (5-84)||(19282193-19282272)
chr5 (21-98)||(10493953-10494030)
chr5 (29-112)||(30661010-30661093)
chr5 (21-112)||(41783279-41783370)
chr5 (34-112)||(15933114-15933192)
chr5 (31-112)||(3457780-3457861)
chr5 (23-112)||(30051408-30051497)
chr5 (171-274)||(3805058-3805161)
chr5 (31-78)||(39414169-39414216)
chr5 (24-99)||(43386694-43386769)
chr5 (22-112)||(4983402-4983492)
chr5 (5-99)||(31021830-31021924)
chr5 (43-98)||(36523719-36523774)
chr5 (21-99)||(1225318-1225396)
chr5 (21-95)||(2675987-2676061)
chr5 (23-60)||(40056460-40056497)
[»] chr3 (33 HSPs)
chr3 (5-274)||(41609678-41609949)
chr3 (5-274)||(23206387-23206657)
chr3 (5-271)||(32688972-32689230)
chr3 (21-112)||(39135308-39135399)
chr3 (5-109)||(52934769-52934873)
chr3 (21-112)||(39469626-39469717)
chr3 (14-126)||(52199331-52199441)
chr3 (21-105)||(46293308-46293392)
chr3 (21-112)||(33438826-33438917)
chr3 (21-112)||(54393538-54393629)
chr3 (21-122)||(9505216-9505317)
chr3 (165-274)||(39134151-39134260)
chr3 (5-109)||(28242540-28242644)
chr3 (5-113)||(44574479-44574587)
chr3 (5-84)||(50965385-50965465)
chr3 (5-84)||(51068520-51068600)
chr3 (21-112)||(53529685-53529776)
chr3 (23-111)||(18074531-18074619)
chr3 (5-69)||(52199426-52199490)
chr3 (21-112)||(5418632-5418723)
chr3 (5-112)||(39942879-39942986)
chr3 (5-109)||(25253659-25253763)
chr3 (23-112)||(1072806-1072895)
chr3 (53-112)||(45714679-45714738)
chr3 (23-105)||(28687033-28687115)
chr3 (23-109)||(28700954-28701040)
chr3 (31-81)||(37269057-37269107)
chr3 (21-98)||(30662226-30662303)
chr3 (50-99)||(33896797-33896846)
chr3 (21-98)||(40943529-40943606)
chr3 (31-112)||(45995254-45995335)
chr3 (21-98)||(12710670-12710747)
chr3 (35-84)||(19560883-19560932)
[»] scaffold0316 (1 HSPs)
scaffold0316 (5-274)||(19087-19357)
[»] chr6 (26 HSPs)
chr6 (5-274)||(10346512-10346782)
chr6 (25-274)||(8200433-8200683)
chr6 (23-112)||(10961893-10961982)
chr6 (21-112)||(9950855-9950946)
chr6 (21-109)||(1501805-1501893)
chr6 (21-108)||(5640347-5640434)
chr6 (1-99)||(4441376-4441474)
chr6 (21-98)||(3081813-3081890)
chr6 (14-126)||(6999209-6999319)
chr6 (5-109)||(32163498-32163602)
chr6 (24-109)||(12428844-12428929)
chr6 (21-112)||(27984985-27985076)
chr6 (5-112)||(33110412-33110519)
chr6 (23-109)||(11460103-11460189)
chr6 (29-98)||(7437272-7437341)
chr6 (171-274)||(7957433-7957536)
chr6 (23-62)||(13355722-13355761)
chr6 (5-108)||(22295874-22295977)
chr6 (24-77)||(21298902-21298955)
chr6 (40-99)||(3901548-3901607)
chr6 (21-80)||(18095505-18095564)
chr6 (21-66)||(13312022-13312067)
chr6 (38-111)||(16799824-16799897)
chr6 (38-111)||(17071221-17071294)
chr6 (33-98)||(18099784-18099849)
chr6 (39-112)||(8596938-8597011)
[»] chr7 (49 HSPs)
chr7 (5-274)||(48505867-48506137)
chr7 (5-274)||(3930795-3931065)
chr7 (5-274)||(15434039-15434309)
chr7 (5-274)||(42071888-42072149)
chr7 (5-274)||(5795015-5795276)
chr7 (5-249)||(37334099-37334344)
chr7 (5-273)||(36926796-36927065)
chr7 (5-274)||(43052677-43052938)
chr7 (5-237)||(26216106-26216338)
chr7 (54-270)||(388787-389003)
chr7 (5-185)||(28949837-28950019)
chr7 (5-145)||(5776209-5776349)
chr7 (5-125)||(665926-666046)
chr7 (5-112)||(45176204-45176311)
chr7 (167-274)||(45174985-45175092)
chr7 (20-112)||(3942135-3942227)
chr7 (21-112)||(7447835-7447926)
chr7 (165-274)||(7444185-7444294)
chr7 (1-110)||(22075024-22075133)
chr7 (5-127)||(222305-222425)
chr7 (5-126)||(44421980-44422100)
chr7 (14-84)||(10618908-10618978)
chr7 (5-112)||(11595875-11595982)
chr7 (5-84)||(33935495-33935574)
chr7 (11-112)||(40480136-40480237)
chr7 (21-112)||(44994059-44994150)
chr7 (5-112)||(45055687-45055794)
chr7 (220-274)||(28950018-28950072)
chr7 (21-112)||(20400955-20401046)
chr7 (14-109)||(23227087-23227182)
chr7 (14-109)||(23236240-23236335)
chr7 (21-112)||(27231634-27231725)
chr7 (21-109)||(37401661-37401749)
chr7 (21-112)||(17608671-17608762)
chr7 (5-99)||(33171613-33171707)
chr7 (33-84)||(23223561-23223612)
chr7 (21-76)||(29527381-29527436)
chr7 (21-99)||(2466612-2466690)
chr7 (21-66)||(33124700-33124745)
chr7 (49-112)||(1081171-1081234)
chr7 (33-84)||(23237624-23237675)
chr7 (24-98)||(41449724-41449798)
chr7 (21-66)||(26719820-26719865)
chr7 (53-108)||(5283008-5283063)
chr7 (21-80)||(37250025-37250084)
chr7 (21-99)||(29037875-29037953)
chr7 (21-75)||(49001081-49001135)
chr7 (21-98)||(21760678-21760755)
chr7 (21-98)||(30919395-30919472)
[»] chr2 (34 HSPs)
chr2 (5-274)||(36538447-36538717)
chr2 (5-274)||(41958934-41959204)
chr2 (5-274)||(34064505-34064766)
chr2 (5-274)||(26436166-26436415)
chr2 (40-249)||(33831252-33831453)
chr2 (5-126)||(27634611-27634732)
chr2 (5-102)||(33831459-33831556)
chr2 (165-274)||(27633531-27633640)
chr2 (21-112)||(39690124-39690215)
chr2 (5-109)||(44740562-44740665)
chr2 (21-112)||(34116268-34116359)
chr2 (21-109)||(3409283-3409371)
chr2 (5-112)||(2647053-2647160)
chr2 (5-56)||(33164059-33164110)
chr2 (24-109)||(40680178-40680263)
chr2 (21-112)||(38409666-38409757)
chr2 (35-112)||(20987768-20987845)
chr2 (21-98)||(40458889-40458966)
chr2 (21-101)||(11027873-11027953)
chr2 (21-112)||(27902534-27902624)
chr2 (24-112)||(30713110-30713198)
chr2 (14-84)||(2578061-2578131)
chr2 (28-82)||(14103251-14103305)
chr2 (35-112)||(18667705-18667782)
chr2 (5-82)||(24844745-24844822)
chr2 (5-109)||(9963716-9963820)
chr2 (28-112)||(44935721-44935805)
chr2 (21-112)||(10412394-10412485)
chr2 (223-274)||(20986455-20986506)
chr2 (21-96)||(11007067-11007142)
chr2 (27-110)||(12084060-12084143)
chr2 (31-72)||(19589879-19589920)
chr2 (23-84)||(41332213-41332274)
chr2 (42-98)||(29806885-29806941)
[»] chr4 (56 HSPs)
chr4 (14-274)||(53369479-53369740)
chr4 (5-274)||(12789631-12789901)
chr4 (5-271)||(49820778-49821043)
chr4 (5-274)||(44791322-44791583)
chr4 (5-274)||(45674635-45674896)
chr4 (5-249)||(50605841-50606069)
chr4 (5-197)||(19852846-19853039)
chr4 (5-185)||(53369752-53369933)
chr4 (5-205)||(48977436-48977637)
chr4 (5-131)||(21441516-21441642)
chr4 (182-274)||(19850520-19850612)
chr4 (21-112)||(36543735-36543826)
chr4 (21-112)||(9469731-9469822)
chr4 (5-109)||(11055305-11055409)
chr4 (5-126)||(52813543-52813662)
chr4 (5-84)||(22184485-22184564)
chr4 (19-112)||(50147011-50147104)
chr4 (21-109)||(48339194-48339282)
chr4 (5-112)||(52706171-52706278)
chr4 (24-109)||(16742423-16742508)
chr4 (14-95)||(19455246-19455327)
chr4 (5-98)||(24007982-24008075)
chr4 (31-98)||(22721296-22721363)
chr4 (14-109)||(26632893-26632988)
chr4 (21-112)||(36156389-36156480)
chr4 (165-240)||(49378093-49378168)
chr4 (21-96)||(56224115-56224190)
chr4 (21-87)||(6866198-6866264)
chr4 (21-126)||(32397793-32397899)
chr4 (6-84)||(49083314-49083392)
chr4 (15-112)||(15697172-15697269)
chr4 (24-96)||(38493075-38493147)
chr4 (28-112)||(43812159-43812243)
chr4 (26-126)||(43387210-43387308)
chr4 (24-84)||(27285618-27285678)
chr4 (21-109)||(48731268-48731356)
chr4 (14-109)||(27891344-27891439)
chr4 (1-79)||(48151201-48151279)
chr4 (21-94)||(24550049-24550122)
chr4 (21-98)||(25134542-25134619)
chr4 (21-85)||(34718120-34718184)
chr4 (50-122)||(38791676-38791748)
chr4 (31-99)||(43798328-43798396)
chr4 (21-109)||(48802571-48802659)
chr4 (24-67)||(9959342-9959385)
chr4 (239-274)||(48977399-48977434)
chr4 (21-126)||(4274680-4274786)
chr4 (21-98)||(80465-80542)
chr4 (23-112)||(25608734-25608823)
chr4 (21-98)||(40797798-40797875)
chr4 (29-98)||(44378218-44378287)
chr4 (24-76)||(41822101-41822153)
chr4 (21-71)||(13455696-13455746)
chr4 (23-64)||(52733797-52733838)
chr4 (23-79)||(5762642-5762697)
chr4 (31-99)||(28265775-28265843)
[»] chr8 (15 HSPs)
chr8 (5-249)||(11161397-11161633)
chr8 (5-266)||(453289-453544)
chr8 (21-112)||(34516092-34516183)
chr8 (5-95)||(43967481-43967571)
chr8 (21-84)||(3307916-3307979)
chr8 (21-84)||(10749314-10749377)
chr8 (21-112)||(34654989-34655080)
chr8 (21-112)||(27189177-27189268)
chr8 (5-84)||(9412603-9412682)
chr8 (21-84)||(23181137-23181200)
chr8 (24-95)||(33280075-33280146)
chr8 (15-76)||(9135942-9136003)
chr8 (14-76)||(35058297-35058359)
chr8 (50-112)||(43955920-43955982)
chr8 (21-98)||(22563974-22564051)
[»] scaffold0224 (1 HSPs)
scaffold0224 (21-112)||(7403-7494)
[»] scaffold0204 (1 HSPs)
scaffold0204 (21-109)||(26716-26804)
[»] scaffold0260 (2 HSPs)
scaffold0260 (29-96)||(11439-11506)
scaffold0260 (29-112)||(9945-10026)
[»] scaffold0022 (1 HSPs)
scaffold0022 (21-105)||(124576-124660)
[»] scaffold0192 (1 HSPs)
scaffold0192 (28-82)||(25667-25721)
[»] scaffold0025 (1 HSPs)
scaffold0025 (31-80)||(11376-11425)
[»] scaffold0954 (1 HSPs)
scaffold0954 (33-84)||(291-342)
[»] scaffold0444 (1 HSPs)
scaffold0444 (29-98)||(870-939)
[»] scaffold0171 (1 HSPs)
scaffold0171 (21-70)||(21084-21133)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 37441265 - 37441535
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| |    
T  37441265 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttaatgagatgtc 37441364  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||||| |||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37441365 tcgattatcgattatatatataaatcaatttgagttagtttttaaaaaaatttaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaaggg 37441464  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37441465 aagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 37441535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 47602941 - 47603211
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |    
T  47602941 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggc 47603040  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||||| |||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  47603041 tcgattatcgattatatatataaatcaatttgagttagtttttaaaaaaatttaattcaaatgtggcaaatgtggttgaatacaattttgtcttgaaggg 47603140  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47603141 aagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 47603211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 270
Target Start/End: Complemental strand, 36419162 - 36418896
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  36419162 gaacctaatgagctggacttgagccgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatgac 36419063  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||||| |||||||||||||||||| ||||| |||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36419062 tcgattatcgattatatatataaatcaatttgaattagtttttaaatttttttaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaaggg 36418963  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgtt 270  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36418962 aagagcagttggagtttaaaagtaaaataatattatgaattttgttcacagctaattgaattttgtt 36418896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 24469896 - 24470113
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |    
T  24469896 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggc 24469995  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||||| |||||||||||||||||| |||||||||||||||        |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  24469996 tcgattatcgattatatatataaatcaatttgagttagtttttaaaaaaatttaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaaggg 24470095  T
Q  204 aaaagcagttggagttta 221  Q
    || |||||||||||||||    
T  24470096 aagagcagttggagttta 24470113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 54 - 271
Target Start/End: Complemental strand, 35309622 - 35309406
Alignment:
Q  54 gagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattattgattatatatataaatcagtttgagttagtttttnnnnnn 153  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||| |||| |||||||||||  ||||| |||||||||||||||          
T  35309622 gagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgcttatcgattatatata--aatcaatttgagttagtttttaaaatt 35309525  T
Q  154 ntt-aattcaaatgtggcaaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcac 252  Q
     || |||||||||||||||||||||||||||| ||||||| |||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  35309524 ttttaattcaaatgtggcaaatgtggctgaattcaattttgtcttaaagggaagagcagttgaagtttaaaagtaaaagaatattatgaattttgttcac 35309425  T
Q  253 agctaattgaattttgttg 271  Q
    |||||||||||||||||||    
T  35309424 agctaattgaattttgttg 35309406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 32179918 - 32179777
Alignment:
Q  6 aacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgact 105  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  32179918 aacctaatgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttcggttcatgagatgact 32179819  T
Q  106 cgattattgattatatatataaatcagtttgagttagttttt 147  Q
    | ||||| |||||||||||||||||| |||||||||||||||    
T  32179818 caattatcgattatatatataaatcaatttgagttagttttt 32179777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 7702892 - 7702775
Alignment:
Q  9 ctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcga 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   ||| ||| ||| ||||||||||||||||  |||||    
T  7702892 ctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttaagctacgcataattctactcgttaggttcatgagatagctcga 7702793  T
Q  109 ttattgattatatatata 126  Q
    ||||||||||||||||||    
T  7702792 ttattgattatatatata 7702775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 46265039 - 46265130
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||||| |||||| ||| |||||||||||||||||||||||    
T  46265039 acttgagctgaaaattaagttcgctaactaattgagctgaacttgaactatatataggtcgactcgtttggttcatgagatgactcgattat 46265130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 7596438 - 7596347
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||| |||||| |||||||||| ||| | |||||||||||||||||||||    
T  7596438 acttgagctgaaaattaagttcgctaactaattgagctgaacttgaactatatgtagttcgactcgtttgattcatgagatgactcgattat 7596347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 23916855 - 23916764
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||| |||| |||||||||| ||| |||||| ||||||||||||||||    
T  23916855 acttgagctgaaaattaagttcgtcaactaattgagctgaacttgagcaatatgtagttcgactcgtttggttcacgagatgactcgattat 23916764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 42916209 - 42916300
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||| | |||||||| |||||| ||| |||||||||||||||||||||||    
T  42916209 acttgagctgaaaattaagttcgctaactaattgagctgaacttgaaccatatataggtcgactcgtttggttcatgagatgactcgattat 42916300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 15306554 - 15306450
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| || |||||| |||||||| ||||||||||||| |||| ||||||||| ||||||||||| |||||||||||||| | | |||||||||| ||||    
T  15306554 gaaccaaatgagctgaacttgagcggaaaattaagttcattaaataaatgagccgaacttgagctgtatatagttcgactcgattggttcatgagctgac 15306455  T
Q  105 tcgat 109  Q
    |||||    
T  15306454 tcgat 15306450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 19508589 - 19508482
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||| | ||||||||| || |||||||||||||| |||||||| ||| |||||| |||||||||||||||||||| |||||| ||  ||||    
T  19508589 gaaccaaacgagccgaacttgagctaaagattaagttcgttaactaaatgagttgaccttgagttatatatagttcgacttgtttggttcacgaactgac 19508490  T
Q  105 tcgattat 112  Q
    ||||||||    
T  19508489 tcgattat 19508482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 35810763 - 35810672
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||| || ||| ||||| |||||||| |||||| |||||||||| ||| |||||| ||||||||||||||||    
T  35810763 acttgagctgaaaattaagttcgtcaaataattgagccgaacttgaactatatgtagttcgactcgtttggttcacgagatgactcgattat 35810672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 15662994 - 15662903
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||| || ||| ||| | |||||| |||||||| ||||||||||  || |||||||||||||||||||||||    
T  15662994 acttgagctgaaaattaagttcgtcaactaattgaaccgaacttaagctatatgtagttcgactcttttggttcatgagatgactcgattat 15662903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 40002939 - 40002848
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||| |||||||||||||||| || ||| |||| |||||||||||||||| |||||||||| ||| | |||| ||||||||||||||||    
T  40002939 acttgagttgaaaattaagttcgtcaactaattgagttgaacttgagctatatgtagttcgactcgtttgattcacgagatgactcgattat 40002848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 42937119 - 42937028
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||| |||||||||||||| || ||| ||||||||||||||||||| |||||||| ||| ||| |||||| ||||||| ||||||||    
T  42937119 acttgagcttaaaattaagttcgtcaactaattgagctgaacttgagctatgtatagttcaactcgtttggttcacgagatgaatcgattat 42937028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 43087545 - 43087650
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||| | |||||| || || ||||||||||||||||||||||| |||||||||| |||||||||||||| | ||| |||||| ||  ||||    
T  43087545 gaaccaaacgagccgaacttgaactaaagattaagttcgttaattaaatgagttgaacttgagttatatatagttcgattcgtttggttcacgaactgac 43087644  T
Q  105 tcgatt 110  Q
    ||||||    
T  43087645 tcgatt 43087650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 31869639 - 31869551
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||| |||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||| | | |||||||||| || ||||||    
T  31869639 acttaagctgaaaattaagttcgttaaataaatgagccgaacttgagctgtatataattcgactcggttggttcatgagctggctcgat 31869551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 20349183 - 20349116
Alignment:
Q  29 tgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcat 96  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||| |||||||    
T  20349183 tgaaaattaagttcgttaattaaatgagctgaatttgaactatatataattcgactcgtttggttcat 20349116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 25124980 - 25125071
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||| ||||| || ||| ||||||||||||||||||||| ||||||  || ||| |||||| ||||||| ||||||||    
T  25124980 acttgagctgaaaattaatttcgtgaactaattgagctgaacttgagctatatgtagttcagctcgtttggttcacgagatgattcgattat 25125071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 39802862 - 39802940
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||| | ||| ||||||||||    
T  39802862 acttgagttgaaaattaagttcgttaaataaatgagccgaacttgagctatgtatagctcgattcgtttggttcatgag 39802940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 3577715 - 3577627
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||||||||||||| | | |||||||| ||||||||||||||||||||||||| |||||||||| | | |||| |||||  ||||||||    
T  3577715 acttgagctgaaaaattaattcgttaaataaatgagctgaacttgagctatatgtagttcgactcggttggtttatgagtagactcgat 3577627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 23915676 - 23915780
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| || |||||| |||| ||||||||||||||||| |||| |||||||| |||||||||| | |||||||||||||| | | |||| ||||| || |    
T  23915676 gaaccaaatgagctgaactttagctgaaaattaagttcattaaataaatgagttgaacttgagttgtatatagttcgactcgattggttaatgagttggc 23915775  T
Q  105 tcgat 109  Q
    |||||    
T  23915776 tcgat 23915780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 13645265 - 13645352
Alignment:
Q  11 aacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| | ||||||||| || |||||||||||||| |||||||| |||| ||||| ||||||||||||||||  || |||||||||    
T  13645265 aacgagccgaacttgagctaaagattaagttcgttaagtaaatgagttgaatttgagttatatatagttcgactcatttggttcatga 13645352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 20347703 - 20347622
Alignment:
Q  29 tgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||||||||||||||||||| |||  |  |||||| ||||||| ||| ||||||| || ||||||||||||    
T  20347703 tgaaaattaagttcgttaattaaatgagctgaatttgtac--tatataattcgactcgtttggttcatcagttgactcgattat 20347622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 7016154 - 7016261
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| || |||||| ||||||||| |||| |||||| |||||   ||| |||||| |||||||||||||  |||||||| ||| || |||||||| |||    
T  7016154 gaaccaaatgagctgaacttgagctcaaaactaagtttgttaacctaataagctgagcttgagctatatacggttcgactcgtttgggtcatgagacgac 7016253  T
Q  105 tcgattat 112  Q
    ||||||||    
T  7016254 tcgattat 7016261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 45581103 - 45581178
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcat 96  Q
    |||||||| ||||||||||||| |||| |||||||| ||||| | |||||||||| |||||||| ||| |||||||    
T  45581103 acttgagcggaaaattaagttcattaactaaatgagatgaacattagctatatatggttcgactcgtttggttcat 45581178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 29677614 - 29677691
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||| || |||| |||||||||||||||||| |||  |||||||||||| ||| | |||||||    
T  29677614 acttgagttgaaaattaagctctttaaataaatgagctgaacttgaactaagtatagttcgactcgtttgcttcatga 29677691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 40159725 - 40159802
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||| ||   ||| |||||||| ||| |||||||||    
T  40159725 acttgagttgaaaattaagttcgttaaataaatgagttgaacttgaacttagtatggttcgactcgtttggttcatga 40159802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 11991309 - 11991254
Alignment:
Q  29 tgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    ||||||||| ||||||||| ||||||| |||||||| | |||||||||||||||||    
T  11991309 tgaaaattatgttcgttaactaaatgaactgaacttaaactatatatagttcgact 11991254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 33233645 - 33233708
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    ||||||||||||||||||| ||||||| |||| ||| | ||||||||||||||||  |||||||    
T  33233645 acttgagctgaaaattaaggtcgttaactaaacgagtttaacttgagctatatatgtttcgact 33233708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 45653526 - 45653589
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    ||||||||| ||| ||||||||||||  ||||||| |||||| ||| |||||||||||||||||    
T  45653526 acttgagctaaaagttaagttcgttagctaaatgaactgaacatgaactatatatagttcgact 45653589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 8828321 - 8828398
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||||||||||||||||  ||||| ||||| || ||||||||||||| | ||| ||||||| ||| | |||||||    
T  8828321 acttgagctgaaaattaagtctgttaactaaataagttgaacttgagctagacataattcgactcgtttgattcatga 8828398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 18349162 - 18349223
Alignment:
Q  51 aatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||| || |||||||||||||| ||||||||||| ||||||| |  ||||||||||||    
T  18349162 aatgagcttaaattgagctatatataattcgacttgtttggttcataaactgactcgattat 18349223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 36119106 - 36119029
Alignment:
Q  32 aaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||| ||||| ||||| |||| ||||||||||||| ||||||||| ||||| | ||| |||||||||| || ||||||    
T  36119106 aaatgaagtttgttaactaaacgagctgaacttgaactatatataattcgattcgtttggttcatgagttggctcgat 36119029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 14770611 - 14770667
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatag 77  Q
    |||||| || |||||||||||||| || ||| ||||||||||||||||||| |||||    
T  14770611 acttgatctaaaaattaagttcgtgaactaattgagctgaacttgagctatttatag 14770667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 14796622 - 14796570
Alignment:
Q  32 aaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||||||||||||| |||||||| |||||||   |||||||||||||||||    
T  14796622 aaattaagttcgttaaataaatgagttgaactttgactatatatagttcgact 14796570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 14805496 - 14805444
Alignment:
Q  32 aaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||||||||||||| |||||||| |||||||   |||||||||||||||||    
T  14805496 aaattaagttcgttaaataaatgagttgaactttgactatatatagttcgact 14805444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 20904041 - 20904121
Alignment:
Q  29 tgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||||||||| || ||||| ||||||||| |||| ||| || ||||||||||||||   | |||||||||| |||||||||    
T  20904041 tgaaaattaaatttgttaaataaatgagccgaacatgaactgtatatagttcgactgaattggttcatgagctgactcgat 20904121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 274
Target Start/End: Complemental strand, 32179724 - 32179689
Alignment:
Q  239 tgaattttgttcacagctaattgaattttgttggat 274  Q
    |||||||||||||||||| |||||||||||||||||    
T  32179724 tgaattttgttcacagcttattgaattttgttggat 32179689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 44596578 - 44596527
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgag 56  Q
    ||||| || |||||| |||||| |||||||||||||||||||| ||||||||    
T  44596578 gaaccaaatgagctgaacttgaactgaaaattaagttcgttaaataaatgag 44596527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 27539930 - 27539872
Alignment:
Q  28 ctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttg 86  Q
    ||||||||| |||||||||| | ||||| ||||||||||| ||||||||| || |||||    
T  27539930 ctgaaaattgagttcgttaacttaatgaactgaacttgagttatatatagctcaacttg 27539872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 50447386 - 50447336
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctat 71  Q
    |||||| || ||||||||||||||||| |||||||| ||||||||| ||||    
T  50447386 acttgaacttaaaattaagttcgttaaataaatgagttgaacttgaactat 50447336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 51432303 - 51432361
Alignment:
Q  26 agctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||||||||||  ||||||| ||||| ||||||||||||| | |||||| |||||||    
T  51432303 agctgaaaattaaaatcgttaaataaattagctgaacttgagttgtatataattcgact 51432361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 5204564 - 5204609
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttga 66  Q
    ||||||| ||||||||||||||||||| ||||||||  ||||||||    
T  5204564 acttgagttgaaaattaagttcgttaaataaatgagtcgaacttga 5204609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 21680751 - 21680828
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||||| ||||||||||||||||  |||| || |||||| | | ||| ||||||||| |||||||  ||||||||    
T  21680751 acttgagctaaaaattaagttcgttagctaaacgaactgaacataaactacatatagttcaacttgtttagttcatga 21680828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 29113622 - 29113710
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||| |||||||||||||| |  ||| ||| ||| |||||||||||||| |||||||| ||| ||| |||||||||| |  |||||||||    
T  29113622 ttgaactgaaaattaagtttgccaataaaa-gaggtgaacttgagctatgtatagttcaactcgtttggttcatgagttagctcgattat 29113710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 48575185 - 48575237
Alignment:
Q  31 aaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgac 83  Q
    |||||||||||||| || |||||||| |||||||||| ||  |||||||||||    
T  48575185 aaaattaagttcgtcaaataaatgagttgaacttgagttaagtatagttcgac 48575237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 27906159 - 27905888
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |    
T  27906159 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgacttgttaggctcatgagatggc 27906060  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt--nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaagg 202  Q
    ||||||||||||||||||||||||||| |||||||||||||||          ||||||||||||||||||||||||||||||||||||| ||||||||     
T  27906059 tcgattattgattatatatataaatcaatttgagttagtttttaaaaaaaaaataattcaaatgtggcaaatgtggctgaatacaattttgtcttgaaga 27905960  T
Q  203 gaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27905959 gaagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 27905888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 18880253 - 18879985
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||| |    
T  18880253 gaacctaacgagctggacttaagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcaactcgttaggtacatgagatggc 18880154  T
Q  105 tcgattattgattatatatataaatcagtttgagttagtttttnnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggga 204  Q
    ||||||||||||||||||||||||||| |||||| ||||||||       |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  18880153 tcgattattgattatatatataaatcaatttgag-tagtttttaaaaaatttaattcaaatgtggcaaatgtggttgaatacaattttgtcttgaaggga 18880055  T
Q  205 aaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18880054 agagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggat 18879985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 29328104 - 29327824
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctat----atatagttcgacttgttaggttcatgaga 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||     ||||||||||||| |||||||||||||||    
T  29328104 gaacctaac-agctggacttgagctgaaaattaagttcgttaattaaatgagcttaacttgagctacgtacatatagttcgactcgttaggttcatgaga 29328006  T
Q  101 tgactcgattattgattatatatata------aatcagtttgagttagtttttnnnnnnn--ttaattcaaatgtggcaaatgtggctgaatacaatttt 192  Q
    |||||||||||| || ||||||||||      ||||| |||||||||||||||         |||||||||||||||||||||||  |||||||||||||    
T  29328005 tgactcgattatcgaatatatatatatatataaatcaatttgagttagtttttaaaaaaaatttaattcaaatgtggcaaatgtgattgaatacaatttt 29327906  T
Q  193 atcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
     |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29327905 gtcttgaagggaagagcaattggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 29327824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 63 - 274
Target Start/End: Complemental strand, 22922053 - 22921841
Alignment:
Q  63 ttgagctatatatagttcgacttgttaggttcatgagatgactcgattattgattatatatataaatcagtttgagttagtttttnnnnnnn-ttaattc 161  Q
    |||||||| |||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||        |||||||    
T  22922053 ttgagctacatatagttagactcgttaggttcatgagatggctcgattattgattatatatataaatcaatttgagttagtttttaaaaaaaattaattc 22921954  T
Q  162 aaatgtggcaaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattg 261  Q
    ||||||| ||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22921953 aaatgtgacaaatgtggctgaatacgattttgtcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattg 22921854  T
Q  262 aattttgttggat 274  Q
    |||||||||||||    
T  22921853 aattttgttggat 22921841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 3801459 - 3801550
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||| | |||||||||||||||||||||||||||    
T  3801459 acttgagctgaaaattaagttcgttaattaaatgagttgaacttgaactataaatggttcgattcgttaggttcatgagatgactcgattat 3801550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 32157032 - 32157123
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||| || |||||| | |||| ||||||||||||||||||||||    
T  32157032 acttgagttgaaaattaagttcgttaattaaatgagctgaacttgaactatagatggttcgattcgttaagttcatgagatgactcgattat 32157123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 38522956 - 38523035
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| | ||| |||||||||||    
T  38522956 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgaactatagatggttcgattcgttgggttcatgaga 38523035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 11136085 - 11136192
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||| | ||||||||| || |||||||||||||| |||||||| |||||||||| |||||||||||||||| ||| |||| | ||  ||||    
T  11136085 gaaccaaacgagccgaacttgagctaaagattaagttcgttaactaaatgagttgaacttgagttatatatagttcgactcgtttggtttacgaactgac 11136184  T
Q  105 tcgattat 112  Q
    ||||||||    
T  11136185 tcgattat 11136192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 20190679 - 20190770
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||| ||||||||||||| |   ||| ||||||||||||||||||||| |||||||| | ||| |||||||||||||||||||||||    
T  20190679 acttgagctcaaaattaagttcgctgcctaattgagctgaacttgagctatatgtagttcgaatcgtttggttcatgagatgactcgattat 20190770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 31620929 - 31620822
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||| ||| || |||| ||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||| ||| |||| ||||  || |    
T  31620929 gaacctaatgagttgaacttcagctgaatattaagttcgttaattaaatgagctgaacttgagttacatataattcgactcgtttggttaatgacttggc 31620830  T
Q  105 tcgattat 112  Q
    ||||||||    
T  31620829 tcgattat 31620822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 1840766 - 1840883
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| || |||||| |||||||||||||||||||||||| || ||||||||||||||||||| | ||||||||||| || | | ||||||| || || |    
T  1840766 gaaccaaatgagctgaacttgagctgaaaattaagttcgtgaaataaatgagctgaacttgagatgtatatagttcggctcggttggttcataagctggc 1840865  T
Q  105 tcgattattgattatata 122  Q
    ||||| || ||| |||||    
T  1840866 tcgataatcgataatata 1840883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 105
Target Start/End: Complemental strand, 20189018 - 20188934
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgact 105  Q
    |||||| || |||||||||||||| || ||| ||||||||||||||||||||| |||||||||| ||| |||||| |||||||||    
T  20189018 acttgaactaaaaattaagttcgtcaactaattgagctgaacttgagctatatgtagttcgactcgtttggttcacgagatgact 20188934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 26218108 - 26218004
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||| | ||||||||| || |||||||||||||| |||||||| | |||||||| |||||||||||||||| ||| |||||| ||  ||||    
T  26218108 gaaccaaacgagccgaacttgagctaaagattaagttcgttaactaaatgagttaaacttgagttatatatagttcgactcgtttggttcacgaactgac 26218009  T
Q  105 tcgat 109  Q
    |||||    
T  26218008 tcgat 26218004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 14500785 - 14500892
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||| | ||||||||| || |||||||||||||| | |||||| |||||||||| ||||||||| |||||| ||| |||||| ||  ||||    
T  14500785 gaaccaaacgagccgaacttgagctaaagattaagttcgttaactgaatgagttgaacttgagttatatatagctcgactcgtttggttcacgaactgac 14500884  T
Q  105 tcgattat 112  Q
    ||||||||    
T  14500885 tcgattat 14500892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 19282193 - 19282272
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    ||||| || |||||| ||||||||||||||||| ||||||||| || ||||||||||||||| || ||||||||||||||    
T  19282193 gaaccaaatgagctgaacttgagctgaaaattaggttcgttaagtagatgagctgaacttgaactgtatatagttcgact 19282272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 10494030 - 10493953
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||| ||||||| |||||||||||||||||| |||  |||||||||||| ||| |||||||||    
T  10494030 acttgagttgaaaattaagctcgttaaataaatgagctgaacttgaactaagtatagttcgactcgtttggttcatga 10493953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 30661010 - 30661093
Alignment:
Q  29 tgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||| |||||||| |||||  |||| ||| ||||||||||||||||| ||| |||||||||  ||||||||||||    
T  30661010 tgaaaattaagtttgttaattatatgagtcgaacatgaactatatatagttcgactcgtttggttcatgaactgactcgattat 30661093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 41783370 - 41783279
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||| || |||||||||||||| |||||||| |||||||||| ||||| |||||||||  ||| |||||| ||  ||||||||||||    
T  41783370 acttgagctaaagattaagttcgttaactaaatgagttgaacttgagttatatgtagttcgacccgtttggttcacgaactgactcgattat 41783279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 112
Target Start/End: Complemental strand, 15933192 - 15933114
Alignment:
Q  34 attaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||| ||||||||| |||||||||||||| || |||||||| ||| |||||||||| |  |||||||||    
T  15933192 attaagttcgttaaataaatgagccgaacttgagctatagatggttcgactcgtttggttcatgagttagctcgattat 15933114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 3457861 - 3457780
Alignment:
Q  31 aaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||  |||| ||| ||||||||||   ||||||||||    
T  3457861 aaaattaagttcgttaaataaatgagttggacttgagctatatatagtctgactcgtttggttcatgagccaactcgattat 3457780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 30051497 - 30051408
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||| ||||||||||||| |||||||| |||||  |||| ||| ||||||||||||||||| |||  ||||||||  ||||||||||||    
T  30051497 ttgagatgaaaattaagtttgttaattatatgagtcgaacatgaactatatatagttcgactcgtttagttcatgaactgactcgattat 30051408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 3805058 - 3805161
Alignment:
Q  171 aaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgtt 270  Q
    |||||||||||||||||||||| |||| ||||| | |||| |||||||||  ||||| || ||||||||| ||| ||||  |  |||||||| |||||||    
T  3805058 aaatgtggctgaatacaattttgtctttaaggggagagcaattggagtttggaagtagaaaaatattatgcattctgttatcgactaattgagttttgtt 3805157  T
Q  271 ggat 274  Q
    ||||    
T  3805158 ggat 3805161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 78
Target Start/End: Complemental strand, 39414216 - 39414169
Alignment:
Q  31 aaaattaagttcgttaattaaatgagctgaacttgagctatatatagt 78  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  39414216 aaaattaagttcgttaaataaatgagctgaacttgagttatatatagt 39414169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 43386769 - 43386694
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    ||||||||||||||||||| |||| |||||||  |||||||||| |||| || |||| ||| ||| ||||||||||    
T  43386769 tgagctgaaaattaagttctttaaataaatgaattgaacttgagttatagatggttcaactcgtttggttcatgag 43386694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 4983402 - 4983492
Alignment:
Q  22 cttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||| || |||||||||||||| |||| ||| |||||||||| ||||| |||||| | | ||| |||||| ||  ||||||||||||    
T  4983402 cttgagctaaagattaagttcgttaactaaaggagttgaacttgagttatatgtagttcaattcgtttggttcacgaactgactcgattat 4983492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 31021924 - 31021830
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    ||||| || |||||| | |||||||  |||||||||| ||||| ||||||||||||| || ||||||| |||||||| || ||| | ||||||||    
T  31021924 gaaccaaatgagctgaatttgagcttgaaattaagtttgttaactaaatgagctgaatttaagctatacatagttcgtctcgtttgattcatgag 31021830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 36523774 - 36523719
Alignment:
Q  43 gttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||| ||||||||||||||||||||||| ||||||| || | ||| |||||||||    
T  36523774 gttaaataaatgagctgaacttgagctatgtatagtttgattcgtttggttcatga 36523719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 1225396 - 1225318
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    ||||||| ||||||||||| |||| || ||||||| | |||||||| |||  |||| ||||||| ||| ||||||||||    
T  1225396 acttgagttgaaaattaagctcgtcaaataaatgaaccgaacttgaactacgtataattcgactcgtttggttcatgag 1225318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 2676061 - 2675987
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttca 95  Q
    |||||||||||||||||||||||| || ||| | |  ||||||||| |||||| || ||||||| ||| ||||||    
T  2676061 acttgagctgaaaattaagttcgtcaactaattaaattgaacttgaactatatgtaattcgactcgtttggttca 2675987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 40056460 - 40056497
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctga 60  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  40056460 ttgagatgaaaattaagttcgttaaataaatgagctga 40056497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 41609949 - 41609678
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  41609949 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttgggttcatgagatgac 41609850  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt--nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaagg 202  Q
    |||||||| |||||||||||||||||| |||||||||||||||         |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  41609849 tcgattatcgattatatatataaatcaatttgagttagttttttaaaaaaaattaattcaaatgaggcaaatgtggctgaatacaattttgtcttgaagg 41609750  T
Q  203 gaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41609749 gaagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 41609678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 23206387 - 23206657
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  23206387 gaacctaacgagctggacttgagctgaaaattaagttc-ttaattaaatgagctgaacttaagctacatatagttcgacttattaggttcatgagatgac 23206485  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt--nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaagg 202  Q
    || ||||| |||||||||||||||||| |||||||||||||||         |||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  23206486 tcaattatcgattatatatataaatcaatttgagttagtttttaaaaaaaaattaattcaaatgtggcaaatgtcgcttaatacaattttgtcttgaagg 23206585  T
Q  203 gaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
     |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23206586 aaaaaacagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattaaattttgttggat 23206657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 5 - 271
Target Start/End: Complemental strand, 32689230 - 32688972
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  32689230 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaagttcatgagatgac 32689131  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    || |||||||||||||||||||||||| |||||||||||||||        ||||||         ||||||||||||||||||||||| ||||||||||    
T  32689130 tcaattattgattatatatataaatcaatttgagttagtttttaaaattttttaatt---------caaatgtggctgaatacaattttgtcttgaaggg 32689040  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttg 271  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32689039 aagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttg 32688972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 39135399 - 39135308
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||| | |||||||||||||||||||||||||||    
T  39135399 acttgagctgaaaattaagttcgttaattaaatgagctgaacttaaactatagatggttcgattcgttaggttcatgagatgactcgattat 39135308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 52934873 - 52934769
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| || |||||| |||||||| |||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| | | |||||||||| ||||    
T  52934873 gaaccaaatgagctgaacttgagcagaaaattaagttcgttaaataaatgagccgaacttgatctatatatagttcgactcgattggttcatgagctgac 52934774  T
Q  105 tcgat 109  Q
    |||||    
T  52934773 tcgat 52934769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 39469626 - 39469717
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  |||| || |||||| | |||||||||||||||||||| ||||||    
T  39469626 acttgagctgaaaattaagttcgttaattaaatgagctaaacttgaattatagattgttcgattcgttaggttcatgagatgactagattat 39469717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 52199441 - 52199331
Alignment:
Q  14 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattatt 113  Q
    |||||| |||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||   | |||||||||| || |||||| ||     
T  52199441 gagctgaacttgagctgaaaattaagttcgttaaacaaatgagctgaacttgagctttatatagttcgactcagttggttcatgagttggctcgataat- 52199343  T
Q  114 gattatatatata 126  Q
     ||||||||||||    
T  52199342 -attatatatata 52199331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 46293308 - 46293392
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgact 105  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | ||||| ||||||||| | ||| ||||||||||||||||    
T  46293308 acttgagctgaaaattaagttcgttaattaaatgagttgaacttaaactataaatagttcgattcgtttggttcatgagatgact 46293392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 33438826 - 33438917
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||| || ||| |||||| || |||| |||||| |||||||||||||| |||||| ||||||||||||||||    
T  33438826 acttgagctgaaaattaagttcgtcaactaattgagctaaagttgaactatatgtagttcgacttgtttggttcacgagatgactcgattat 33438917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 54393538 - 54393629
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||| || ||| ||||| |||||||| |||||| |||||||||| ||| |||||| ||||||||||||||||    
T  54393538 acttgagctgaaaattaagttcgtcaaataattgagccgaacttgaactatatgtagttcgactcgtttggttcacgagatgactcgattat 54393629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 122
Target Start/End: Original strand, 9505216 - 9505317
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattattgattata 120  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||  | | | |||||||||| || |||||| || ||| |||    
T  9505216 acttgagctgaaaattaagttcgttaaataaatgagctgaacttgagatatatatagttcggttcggttggttcatgagctggctcgataatcgataata 9505315  T
Q  121 ta 122  Q
    ||    
T  9505316 ta 9505317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 39134260 - 39134151
Alignment:
Q  165 tgtggcaaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaat 264  Q
    ||||||||||||| |||||||||||||  |||||||| | | |||| |||||||||  ||||| |||||||||||||||| ||||  ||| |||||||||    
T  39134260 tgtggcaaatgtgactgaatacaatttcgtcttgaagaggagagcaattggagtttggaagtagaagaatattatgaattatgttatcagttaattgaat 39134161  T
Q  265 tttgttggat 274  Q
    ||||||||||    
T  39134160 tttgttggat 39134151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 28242644 - 28242540
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| || |||||| | |||||||||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||| | | |||||||||| || |    
T  28242644 gaaccaaatgagctgaatttgagctgaaaattaaattcgttaaataaatgatctgaacttgagctgtatatagttcgactcggttggttcatgagctggc 28242545  T
Q  105 tcgat 109  Q
    |||||    
T  28242544 tcgat 28242540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 44574587 - 44574479
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||| |||||| ||||||| | ||||| ||||||||| ||||||||||| |||||||||||| |||||||||| || ||| |||||||||| |  |    
T  44574587 gaacctaatgagctgaacttgagttaaaaatcaagttcgtttattaaatgagccgaacttgagctacatatagttcggctcgtttggttcatgagttagc 44574488  T
Q  105 tcgattatt 113  Q
    |||||||||    
T  44574487 tcgattatt 44574479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 50965465 - 50965385
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaa-ttaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||||| |||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  50965465 gaacctaatgagctgaatttgagctgaaaaattaagttcgttaaataaatgagctgaacttgagctatatatggttcgact 50965385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 51068600 - 51068520
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaa-ttaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||||| |||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  51068600 gaacctaatgagctgaatttgagctgaaaaattaagttcgttaaataaatgagctgaacttgagctatatatggttcgact 51068520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 53529685 - 53529776
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||| || ||| |||||||||||||| |||||| | |||||||| ||| ||||||  |||||||||||||||    
T  53529685 acttgagctgaaaattaagttcgtcaactaattgagctgaacttgaactatatgttgttcgactcgtttggttcacaagatgactcgattat 53529776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 18074619 - 18074531
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgatta 111  Q
    |||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||| |||||||  ||||| ||| ||||| |||||    
T  18074619 ttgaactgaaaattaagttcgttaactaaatgagctgaaattgagctatatataattcaacttgtttagttcaagagttgacttgatta 18074531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 52199490 - 52199426
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagct 69  Q
    ||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  52199490 gaaccaaacgagctgaacttgagctgaaaattaagttcgttaaacaaatgagctgaacttgagct 52199426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 5418723 - 5418632
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||| || |||||||||||||| |||||||| |||||||||| ||||||||||||||||  || |||||| ||  ||||||||||||    
T  5418723 acttgagctaaagattaagttcgttaactaaatgagttgaacttgagttatatatagttcgactcatttggttcacgaactgactcgattat 5418632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 39942879 - 39942986
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||| ||| |||||| ||||||||||||||||||||||||||| || |||||||||||||||| |||| || | |||||| ||| |||| ||||| |  |    
T  39942879 gaacttaatgagctgaacttgagctgaaaattaagttcgttaaatagatgagctgaacttgagttatagatggctcgactcgtttggtttatgagttagc 39942978  T
Q  105 tcgattat 112  Q
    ||||||||    
T  39942979 tcgattat 39942986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 25253763 - 25253659
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| || |||||| ||||||||| ||||||||||||||||| ||||||||| |||||| |||||||| ||  |||||| | | |||||||||| || |    
T  25253763 gaaccaaatgagctgaacttgagctaaaaattaagttcgttaaataaatgagccgaacttaagctatatgtaactcgactcgattggttcatgagttggc 25253664  T
Q  105 tcgat 109  Q
    |||||    
T  25253663 tcgat 25253659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 1072806 - 1072895
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||| |||||||||||| ||||||  ||||| ||||||||||| ||||||||||||| || ||| ||| |||||| ||| ||||||||    
T  1072806 ttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatatatagttcgcctcgtttggtccatgagttgattcgattat 1072895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 45714738 - 45714679
Alignment:
Q  53 tgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||| |||||| |||||||||| ||| |||||| ||||||||||||||||    
T  45714738 tgagctgaacttgaactatatgtagttcgactcgtttggttcacgagatgactcgattat 45714679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 28687115 - 28687033
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgact 105  Q
    ||||||||||||||||||||||||| |||| ||||| ||||| |||||||| ||||| |||| | | |||| ||||| |||||    
T  28687115 ttgagctgaaaattaagttcgttaaataaacgagctcaacttaagctatatgtagtttgactcggttggtttatgagttgact 28687033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 28701040 - 28700954
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||| ||||||||||| ||||||||  ||||||| |||||||||| ||||| |||||||||| | | | |||||||| |||||||||    
T  28701040 ttgaactgaaaattaaattcgttaaaaaaatgagttgaacttgagttatatctagttcgactcggttgattcatgagttgactcgat 28700954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 37269107 - 37269057
Alignment:
Q  31 aaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcg 81  Q
    ||||||||||||||||| |||||||  ||||||||| ||||||||||||||    
T  37269107 aaaattaagttcgttaactaaatgaagtgaacttgaactatatatagttcg 37269057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 30662226 - 30662303
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||| ||||||| ||||||||  ||||||||| |   |||||||||||| ||| |||||||||    
T  30662226 acttgagttgaaaattaagctcgttaaataaatgagtcgaacttgagttgagtatagttcgactcgtttggttcatga 30662303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 33896846 - 33896797
Alignment:
Q  50 aaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    |||||||||||||||||| |||||||||||||||| |||  |||||||||    
T  33896846 aaatgagctgaacttgagttatatatagttcgactcgtttagttcatgag 33896797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 40943606 - 40943529
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||| ||||||| |||||||| ||||||||| ||   ||| |||||||| ||| |||||||||    
T  40943606 acttgagttgaaaattaagctcgttaaataaatgagttgaacttgaacttagtatggttcgactcgtttggttcatga 40943529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 45995335 - 45995254
Alignment:
Q  31 aaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||| || ||| | ||||||||||||| ||||| |||||| | | |||  ||||| ||||||||||||||||    
T  45995335 aaaattaagttcgtcaactaattaagctgaacttgagttatatgtagttctattcgtttagttcacgagatgactcgattat 45995254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 12710747 - 12710670
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||| ||||||| ||||||||  ||||||||| |   ||| |||||||| ||| |||||||||    
T  12710747 acttgagttgaaaattaagctcgttaaataaatgagtcgaacttgagttgagtatggttcgactcgtttggttcatga 12710670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 19560883 - 19560932
Alignment:
Q  35 ttaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||| |||||| ||||||||| ||||||||| ||||||||||| ||||    
T  19560883 ttaagtccgttaaataaatgagccgaacttgagttatatatagtttgact 19560932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 19357 - 19087
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |    
T  19357 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatataattcgactcgttaggttcatgagatggc 19258  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19257 tcgattattgattatatatataaatcaatttgagttagtttttaaaattttttaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaaggg 19158  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  19157 aagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattaaattttgttggat 19087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 10346782 - 10346512
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||||    
T  10346782 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagttacatatagttcgactcgttaagttcatgagatgac 10346683  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    ||||||||||||||||||||||||||| ||||||||| |||||        |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10346682 tcgattattgattatatatataaatcaatttgagttattttttaaaattttttaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaaggg 10346583  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10346582 aagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggat 10346512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 25 - 274
Target Start/End: Complemental strand, 8200683 - 8200433
Alignment:
Q  25 gagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattattgattatatata 124  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||    
T  8200683 gagctgaaaattaagttcgttaattaaatgagttgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatata 8200584  T
Q  125 taaatcagtttgagttagtttttnnnnnnn-ttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaa 223  Q
    ||||||| ||||||||||||| |        |||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||    
T  8200583 taaatcaatttgagttagtttataaaaaaaattaattcaaatgtggcaaatgtggttgaatacaattttgtcttgaagggaagagcagttggagtttaaa 8200484  T
Q  224 agtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  8200483 agtaaaagaatattatgaattttgttcacagctaattgaactttgttggat 8200433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 10961893 - 10961982
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||| || ||| |||||||||||||| |||||| |||||||||| ||| |||||| ||||||||||||||||    
T  10961893 ttgagctgaaaattaagttcgtcaactaattgagctgaacttgaactatatgtagttcgactcgtttggttcacgagatgactcgattat 10961982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 9950855 - 9950946
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||| |||||||||||||||| || ||| ||||||||||||||||||||| |||||| ||| ||| |||||| ||||||||||||||||    
T  9950855 acttgagttgaaaattaagttcgtcaactaattgagctgaacttgagctatatgtagttcaactcgtttggttcacgagatgactcgattat 9950946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 1501893 - 1501805
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| |||| |||||||||||||| | | |||||||||| |||||||||    
T  1501893 acttgagctgaaaattaagttcgttaaataaatgagccaaacttaagctgtatatagttcgactcggttggttcatgagctgactcgat 1501805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 5640347 - 5640434
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcga 108  Q
    |||||| ||||||||||||||||| || ||| |||||||||||||| ||||||||||||||||| ||| ||||||  |||||||||||    
T  5640347 acttgaactgaaaattaagttcgtcaactaattgagctgaacttgaactatatatagttcgactcgtttggttcacaagatgactcga 5640434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 4441376 - 4441474
Alignment:
Q  1 tcacgaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    ||||||||  || |||||| ||||||| ||||||||||||||||||| |||||||||||||||||| || |||||||||||| | | | ||||||||||    
T  4441376 tcacgaactaaatgagctgaacttgagttgaaaattaagttcgttaaataaatgagctgaacttgaactgtatatagttcgattcggttggttcatgag 4441474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 3081813 - 3081890
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||| |||  |||||||||||| ||| |||||||||    
T  3081813 acttgagttgaaaattaagctcgttaattaaatgagctgaacttgaactaagtatagttcgactcgtttggttcatga 3081890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 6999319 - 6999209
Alignment:
Q  14 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattatt 113  Q
    |||||| ||||||||||||||||||||| |||||  |||||| |||||||||| || |||||||||||||| | | |||||||||| || |||||| ||     
T  6999319 gagctgaacttgagctgaaaattaagtttgttaaacaaatgaactgaacttgaactttatatagttcgactcggttggttcatgagttggctcgataat- 6999221  T
Q  114 gattatatatata 126  Q
     ||||||||||||    
T  6999220 -attatatatata 6999209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 32163602 - 32163498
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||| |||||  ||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||| ||| | || ||||| |||||||| |||     
T  32163602 gaacctaatgagctaaacttgagttgaaaattaagttcgttaactaaatgagcttaacttgagccatatatcgtttgcctagttagattcatgagttgat 32163503  T
Q  105 tcgat 109  Q
    |||||    
T  32163502 tcgat 32163498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 12428929 - 12428844
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||  || ||| | | |||||||||| |||||||||    
T  12428929 tgagctgaaaattaagttcgttaaataaatgagccgaacttgagctatatgtaactcaactcgattggttcatgagttgactcgat 12428844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 27984985 - 27985076
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||| |||||||||||||| || || ||| |||||||||||||| ||| || |||||||||| |||  ||||| ||||||||||||||||    
T  27984985 acttgaactgaaaattaagtttgtaaactaattgagctgaacttgaactagatgtagttcgactcgtttagttcacgagatgactcgattat 27985076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 33110519 - 33110412
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||| | |||| |||| || |||||||||||||| ||||||||  ||||||||| |||||||||||||||| ||| |||||| ||  | ||    
T  33110519 gaaccaaacgagccgaacttaagctaaagattaagttcgttaactaaatgagtcgaacttgagttatatatagttcgactcgtttggttcacgaactaac 33110420  T
Q  105 tcgattat 112  Q
    ||||||||    
T  33110419 tcgattat 33110412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 11460103 - 11460189
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||| |  ||||||||||||| | | |||| ||||| |||||||||    
T  11460103 ttgagctgagaattaagtttgttaaataaatgagctgaacttgagttgaatatagttcgactcggttggtttatgagctgactcgat 11460189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 7437341 - 7437272
Alignment:
Q  29 tgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||||||| ||||||| |||||||||||||||||| |||  |||||||||||| ||| |||||||||    
T  7437341 tgaaaattaagctcgttaaataaatgagctgaacttgaactaagtatagttcgactcgtttggttcatga 7437272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 7957536 - 7957433
Alignment:
Q  171 aaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgtt 270  Q
    |||||| ||||||||||||||  |||| ||| | | |||| |||||||||  ||||| |||||||||||| ||| ||||| || |||||||| |||||||    
T  7957536 aaatgtagctgaatacaatttagtcttaaagaggagagcaattggagtttggaagtagaagaatattatgcattctgttctcaactaattgagttttgtt 7957437  T
Q  271 ggat 274  Q
    ||||    
T  7957436 ggat 7957433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 13355722 - 13355761
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaac 62  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13355722 ttgagctgaaaattaagttcgttaattaaatgagctgaac 13355761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 22295977 - 22295874
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||| | ||||||||| || |||||||||||||| |||||| | |||| ||||| |||||||||||| |||  || |||||||||  ||||    
T  22295977 gaaccaaacgagccgaacttgagctaaagattaagttcgttaagtaaatgtgttgaatttgagttatatatagttcaactcttttggttcatgaactgac 22295878  T
Q  105 tcga 108  Q
    ||||    
T  22295877 tcga 22295874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 21298955 - 21298902
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatag 77  Q
    |||||||||||||||||| ||||||||| |||||||||||||||  ||||||||    
T  21298955 tgagctgaaaattaagtttgttaattaactgagctgaacttgagtcatatatag 21298902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 3901607 - 3901548
Alignment:
Q  40 ttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    ||||||||||||||||||||||||| || |||||||||||||  | ||| ||||||||||    
T  3901607 ttcgttaattaaatgagctgaacttaagttatatatagttcggttcgtttggttcatgag 3901548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 18095564 - 18095505
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttc 80  Q
    ||||||| | ||||||||||||||||| |||||||| ||||||||||||||  |||||||    
T  18095564 acttgagttaaaaattaagttcgttaaataaatgagatgaacttgagctatgcatagttc 18095505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 13312067 - 13312022
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttga 66  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||    
T  13312067 acttgagttgaaaattaagttcgttaaataaatgagttgaacttga 13312022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 16799824 - 16799897
Alignment:
Q  38 agttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgatta 111  Q
    ||||||||||||||||||| ||||||  || ||||||| ||| ||||||||  ||||||||  |||||||||||    
T  16799824 agttcgttaattaaatgagttgaactaaagttatatatggtttgacttgtttagttcatgatctgactcgatta 16799897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 17071221 - 17071294
Alignment:
Q  38 agttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgatta 111  Q
    |||||||||| |||||||| ||||||  || ||||||| ||| |||||||| |||||||||  |||||||||||    
T  17071221 agttcgttaactaaatgagttgaactaaagttatatatggtttgacttgtttggttcatgatctgactcgatta 17071294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 18099849 - 18099784
Alignment:
Q  33 aattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||||||||||| |||||||| ||||||||||||||  ||||||| | | ||| |||||||||    
T  18099849 aattaagttcgttaaataaatgagatgaacttgagctatgcatagttcaattcgtttggttcatga 18099784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 8596938 - 8597011
Alignment:
Q  39 gttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||| |||||||| | ||||||  ||||||||||||| |||   | |||||||||| ||||||||||||    
T  8596938 gttcgttaactaaatgagttaaacttgtactatatatagttcaactcaattggttcatgagttgactcgattat 8597011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 49)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 48505867 - 48506137
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||| |    
T  48505867 gaacctaatgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggtacatgagatggc 48505966  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48505967 tcgattattgattatatatataaatcaatttgagttagtttttaaaaaaaattaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaaggg 48506066  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  48506067 aagaacagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggat 48506137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 3930795 - 3931065
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||||| |    
T  3930795 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcaactcgttaggtacatgagatggc 3930894  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3930895 tcgattattgattatatatataaatcaatttgagttagtttttaaaaaaaattaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaaggg 3930994  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || |  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3930995 aagactagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggat 3931065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 15434309 - 15434039
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||| |    
T  15434309 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatctagttcgactcgttagcttcatgagatggc 15434210  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||||| |||||||||||||||||| ||| |||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15434209 tcgattatcgattatatatataaatcaattttagttagtttttaaattttattaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaaggg 15434110  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15434109 aagagcagtgggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggat 15434039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 42072149 - 42071888
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  42072149 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatgac 42072050  T
Q  105 tcgattattgattatatatataaatcagtttgagttagtttttnnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggga 204  Q
    ||||||||||||||||||||||||||| |||||||||||||||         |||| || |    ||||||||||||||||||||||| ||||||| |||    
T  42072049 tcgattattgattatatatataaatcaatttgagttagtttttaaaaa----aatttaatt----caaatgtggctgaatacaattttgtcttgaaagga 42071958  T
Q  205 aaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    | | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42071957 agaacagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggat 42071888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 5795015 - 5795276
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| |    
T  5795015 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcaactcgttaggttcatgagatggc 5795114  T
Q  105 tcgattattgattatatatataaatcagtttgagttagtttttnnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggga 204  Q
    |||||||| |||||||||||||||||| |||||||||||||||         |||| || |    ||||||||||||||||||||||| |||||||||||    
T  5795115 tcgattatcgattatatatataaatcaatttgagttagtttttaaaaa----aatttaatt----caaatgtggctgaatacaattttgtcttgaaggga 5795206  T
Q  205 aaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  5795207 agagcagttggagtttaaaagtaaaagaatattatgaattttattcacaactaattgaattttgttggat 5795276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 37334344 - 37334099
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||| |    
T  37334344 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcattaggttcatgagatggc 37334245  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||| | |||||||||||||||||| |||||||||||||||        |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  37334244 tcgattgtcgattatatatataaatcaatttgagttagtttttaaaaaaaattaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaaggg 37334145  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgtt 249  Q
    || ||||||||||||||| |||||||||||||||||||||||||||    
T  37334144 aagagcagttggagtttataagtaaaagaatattatgaattttgtt 37334099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 36927065 - 36926796
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||| |||||||||  |    
T  36927065 gaacctaacgagttggacttgagctaaaaattaagttcgttaattaaatgagttgaacttgagctacatatagttcgactcgttaggctcatgagattgc 36926966  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt--nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaagg 202  Q
    | ||||||||||||||||||||||||| |||||||||||||||         |||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  36926965 ttgattattgattatatatataaatcaatttgagttagttttttaaaaaaaattaattcaaatgtgacaaatgtggttgaatacaattttgtcttgaagg 36926866  T
Q  203 gaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttgga 273  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  36926865 gaagagcagttggagtttaaaagtaaaag-atattatgaattttgttcacagctaatagaattttgttgga 36926796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 43052938 - 43052677
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| |||||||||||||    
T  43052938 gaacctaatgagctggacttgagccgaaaattaagttcgttaattagatgagctgaacttgagctacatatagttcgactcgttagattcatgagatgac 43052839  T
Q  105 tcgattattgattatatatataaatcagtttgagttagtttttnnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggga 204  Q
    |||||||| |||||||||||||||||| |||||||||||||||       ||  || || |    ||||||||||||||||||||||| |||||||||||    
T  43052838 tcgattatcgattatatatataaatcaatttgagttagttttt----aaatttttttaatt----caaatgtggctgaatacaattttgtcttgaaggga 43052747  T
Q  205 aaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43052746 agagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggat 43052677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 26216338 - 26216106
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| |    
T  26216338 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaaggagctgaacttgagctacatatagttcgactcgttaggttcatgagatggc 26216239  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt--nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaagg 202  Q
    |||||||| |||||||  ||||||||| |||||||||||||||         |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  26216238 tcgattatcgattata--tataaatcaatttgagttagtttttaaaaaaaaattaattcaaatgtggcaaatgtcgctgaatacaattttgtcttgaagg 26216141  T
Q  203 gaaaagcagttggagtttaaaagtaaaagaatatt 237  Q
    ||| |||||||||||||||||||||||||||||||    
T  26216140 gaagagcagttggagtttaaaagtaaaagaatatt 26216106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 54 - 270
Target Start/End: Complemental strand, 389003 - 388787
Alignment:
Q  54 gagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattattgattatatatataaatcagtttgagttagtttttnnnnnn 153  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||          
T  389003 gagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatatataaatcaatttgagttagtttttaaaaaa 388904  T
Q  154 ntt-aattcaaatgtggcaaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcac 252  Q
     || |||||||||||||||||||  ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  388903 atttaattcaaatgtggcaaatggcgctgaatacaattttgtcttgaagggaga-gcagttggagtttaaaagtaaaagaatattatgaattttgttcac 388805  T
Q  253 agctaattgaattttgtt 270  Q
    ||||||||||||||||||    
T  388804 agctaattgaattttgtt 388787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 5 - 185
Target Start/End: Original strand, 28949837 - 28950019
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||    
T  28949837 gaacctaacgagctggaattgagctaaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgaaatgac 28949936  T
Q  105 tcgattattgattatatatataaatcagtttgagttag--tttttnnnnnnnttaattcaaatgtggcaaatgtggctgaata 185  Q
    |||||||| |||||||||||||||||| |||||| |||  |||||       |||||||||||||||||||||||||||||||    
T  28949937 tcgattatcgattatatatataaatcaatttgaggtagtttttttaaaaaaattaattcaaatgtggcaaatgtggctgaata 28950019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 5 - 145
Target Start/End: Original strand, 5776209 - 5776349
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||    
T  5776209 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttcggttcatgagatgac 5776308  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttt 145  Q
    |||||||| ||||||||||| |||||| |||||||||||||    
T  5776309 tcgattatcgattatatataaaaatcaatttgagttagttt 5776349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 665926 - 666046
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||||||| |    
T  665926 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaatttgagctacatatagctcgactcgttaggttcatgagatggc 666025  T
Q  105 tcgattattgattatatatat 125  Q
    |||||||| | ||||||||||    
T  666026 tcgattatcgtttatatatat 666046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 45176311 - 45176204
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||    
T  45176311 gaaccaaacgagctgaactttagctgaaaattaagttcgttaattaaatgagttgaacttgagctacatataattcgactcgttaggttcatgagatgac 45176212  T
Q  105 tcgattat 112  Q
    ||||||||    
T  45176211 tcgattat 45176204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 167 - 274
Target Start/End: Complemental strand, 45175092 - 45174985
Alignment:
Q  167 tggcaaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattt 266  Q
    ||||| |||||||||||||||||||| |||| ||||| | |||| |||||||||| ||||| |||||||||||||||||||||| |||||| ||||||||    
T  45175092 tggcagatgtggctgaatacaattttgtcttaaaggggagagcaattggagtttagaagtagaagaatattatgaattttgttctcagctacttgaattt 45174993  T
Q  267 tgttggat 274  Q
    ||||||||    
T  45174992 tgttggat 45174985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 3942227 - 3942135
Alignment:
Q  20 gacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||| || ||| |||||| ||||||||||||||||    
T  3942227 gacttgagctgaaaattaagttcgtgaattaattgagctgaacttgagctatatgtagttcggctcgtttggttcacgagatgactcgattat 3942135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 7447926 - 7447835
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||| | ||||||||||||||| |||||||||||    
T  7447926 acttgagctgaaaattaagttcgttaattaaatgagttgaacttgaactatagatggttcgattcgttaggttcatgagacgactcgattat 7447835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 7444294 - 7444185
Alignment:
Q  165 tgtggcaaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaat 264  Q
    ||||||||| |||||||||||||||||| |||| ||||| | |||| |||||||||  ||||| |||||||||||||||| ||||| | |||||||||||    
T  7444294 tgtggcaaaagtggctgaatacaattttgtctttaaggggagagcaattggagtttggaagtagaagaatattatgaattatgttctcggctaattgaat 7444195  T
Q  265 tttgttggat 274  Q
    ||||||||||    
T  7444194 tttgttggat 7444185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 22075133 - 22075024
Alignment:
Q  1 tcacgaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgaga 100  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||| | | ||||||| ||     
T  22075133 tcacgaaccaaatgagctgaacttgagctgaaaattaagttcgttaaataaatgagctgaacttgatctgtatatagttcgactcgattggttcattagt 22075034  T
Q  101 tgactcgatt 110  Q
    || |||||||    
T  22075033 tggctcgatt 22075024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 222305 - 222425
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||||| |||||| ||||||||||| ||||||||  |||||||||||||||||||| |||||||||||||| | | |||||||||| | ||    
T  222305 gaaccaaacgagctgaacttgaactgaaaattaaattcgttaaacaaatgagctgaacttgagctttatatagttcgactcggttggttcatgagttaac 222404  T
Q  105 tcgattattgattatatatataa 127  Q
    ||||| ||  |||||||||||||    
T  222405 tcgataat--attatatatataa 222425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 44421980 - 44422100
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaatt-aagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatga 103  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||  |||||||||||||||||||| |||||||||||||| | | |||||||||| ||     
T  44421980 gaaccaaacgagctgaacttgagctgaaaatttaagttcgttaaacaaatgagctgaacttgagctttatatagttcgactcggttggttcatgagttgg 44422079  T
Q  104 ctcgattattgattatatatata 126  Q
    |||||| ||  ||||||||||||    
T  44422080 ctcgataat--attatatatata 44422100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 10618978 - 10618908
Alignment:
Q  14 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  10618978 gagctgaacttgagctgaaaattaagttcgttaaataaatgagctgaacttgagctgtatatagttcgact 10618908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 11595875 - 11595982
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||| | ||||||||| || |||||||||||||| |||||||| ||| |||||| |||||||||||||||||||| |||||| ||  ||||    
T  11595875 gaaccaaacgagccgaacttgagctaaagattaagttcgttaactaaatgagttgaccttgagttatatatagttcgacttgtttggttcacgaactgac 11595974  T
Q  105 tcgattat 112  Q
    ||||||||    
T  11595975 tcgattat 11595982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 33935574 - 33935495
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    ||||| ||||||||| |||||||||||||||||||||||||||  ||||||| |||||||||||| ||||||||||||||    
T  33935574 gaaccaaacgagctgaacttgagctgaaaattaagttcgttaaacaaatgagatgaacttgagctttatatagttcgact 33935495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 40480136 - 40480237
Alignment:
Q  11 aacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgatt 110  Q
    ||||||| | ||||||||| || |||||||||||||| |||||||| |||||||||| |||||||||||||||| ||| |||||| ||  ||||||||||    
T  40480136 aacgagccgaacttgagctaaagattaagttcgttaactaaatgagttgaacttgagttatatatagttcgactcgtttggttcacgaactgactcgatt 40480235  T
Q  111 at 112  Q
    ||    
T  40480236 at 40480237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 44994059 - 44994150
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||||||||| ||| ||| ||||||||| ||||| | ||||||||||||||  ||  ||||||||||||||||||||||    
T  44994059 acttgagctgaaaattaagttcgctaactaattgagctgaatttgagttgtatatagttcgactcattttgttcatgagatgactcgattat 44994150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 45055794 - 45055687
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||| | ||||||||| || |||||||||||||| |||||||| |||||||||| |||||||||||||||| ||| | |||| ||  ||||    
T  45055794 gaaccaaacgagccgaacttgagctaaagattaagttcgttaactaaatgagttgaacttgagttatatatagttcgactcgtttgattcacgaactgac 45055695  T
Q  105 tcgattat 112  Q
    ||||||||    
T  45055694 tcgattat 45055687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 28950018 - 28950072
Alignment:
Q  220 taaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28950018 taaaagtaaaagaatattatgaattttgttcatagctaattgaattttgttggat 28950072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 20401046 - 20400955
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||| || ||||||||| |||||||||||||||||||||||| || ||||||||||||| ||| |||| ||||| || ||| |||||    
T  20401046 acttgagctaaatattaagttctttaattaaatgagctgaacttgagttacatatagttcgactcgtttggttaatgagttggctcaattat 20400955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 23227087 - 23227182
Alignment:
Q  14 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||| | |||| | | |||||||||  |||||||||    
T  23227087 gagctgaacttgagctgaaaattaagttcgttaaataaatgagccgaacttgagttgtatatagcttgactcggttggttcatgaactgactcgat 23227182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 23236240 - 23236335
Alignment:
Q  14 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||| | |||| | | |||||||||  |||||||||    
T  23236240 gagctgaacttgagctgaaaattaagttcgttaaataaatgagccgaacttgagttgtatatagcttgactcggttggttcatgaactgactcgat 23236335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 27231634 - 27231725
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||| ||||||||||||||||| || ||| ||| | |||||| |||||||| ||||| |||| ||| |||||||||||||||||||||||    
T  27231634 acttgaactgaaaattaagttcgtcaactaattgaaccgaacttaagctatatgtagtttgactcgtttggttcatgagatgactcgattat 27231725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 37401661 - 37401749
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    ||||||| |||||||||||||||| || ||| ||||||||| ||||||||||| ||||| |||| ||| | |||| |||||||||||||    
T  37401661 acttgagttgaaaattaagttcgtcaactaattgagctgaagttgagctatatgtagttggactcgtttgattcacgagatgactcgat 37401749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 17608762 - 17608671
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||| ||||||||||||||||| || ||| |||| ||||||||| |||||| |||||| ||||| | |||||| ||||||||| ||||||    
T  17608762 acttgatctgaaaattaagttcgtcaactaattgagttgaacttgatctatatgtagttcaacttggttggttcacgagatgacttgattat 17608671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 33171613 - 33171707
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    ||||| || |||||| ||||||||| |||||||||||| |||| ||||||||| ||||||||| | ||||||||| |||| | | ||||||||||    
T  33171613 gaaccaaatgagctgaacttgagctaaaaattaagttcattaaataaatgagccgaacttgagttgtatatagtttgactcggttggttcatgag 33171707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 23223561 - 23223612
Alignment:
Q  33 aattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||||||||||||||||||||| |||||||||| |||| |||||||||||    
T  23223561 aattaagttcgttaattaaatgagttgaacttgagttatagatagttcgact 23223612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 29527436 - 29527381
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatata 76  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||    
T  29527436 acttcagctgtaaattaagttcgttaattaaatgagctaaacttgaactatatata 29527381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 2466612 - 2466690
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    |||||||||||||||| |||||||||| |||||||||| ||||| | |||||| || ||||||| | | ||||||||||    
T  2466612 acttgagctgaaaatttagttcgttaaataaatgagctaaacttaaactatatgtaattcgactcgattggttcatgag 2466690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 33124745 - 33124700
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttga 66  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  33124745 acttgagctgaaaattaagttcgttaaataaatgagctgaatttga 33124700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 1081234 - 1081171
Alignment:
Q  49 taaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||| ||||||||||||||||||||||| ||||  || |||||||||  ||||||||||||    
T  1081234 taaatgacctgaacttgagctatatatagtttgactcatttggttcatgacctgactcgattat 1081171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 23237624 - 23237675
Alignment:
Q  33 aattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||||||||||||||||||||| |||||||||| |||| | |||||||||    
T  23237624 aattaagttcgttaattaaatgagttgaacttgagttatagacagttcgact 23237675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 41449798 - 41449724
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||||||||||| |||||||| ||||| ||||||||||||| | ||||| ||| |||| | | |||||||||    
T  41449798 tgagctgaaaattaaattcgttaaataaattagctgaacttgagttgtatatcgtttgactcggttggttcatga 41449724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 26719865 - 26719820
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttga 66  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||    
T  26719865 acttgagttgaaaattaagttcgttaaataaatgagttgaacttga 26719820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 5283008 - 5283063
Alignment:
Q  53 tgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcga 108  Q
    |||| ||||||| |||||||| |||||||||| ||| |||||| ||||||||||||    
T  5283008 tgagttgaacttaagctatatgtagttcgactcgtttggttcacgagatgactcga 5283063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 37250084 - 37250025
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttc 80  Q
    |||||||||||||||||| ||||||||  || |||||| ||||||| ||| |||||||||    
T  37250084 acttgagctgaaaattaatttcgttaaccaagtgagctaaacttgaactaaatatagttc 37250025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 29037875 - 29037953
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    ||||||| |||||||||||| ||||||  ||||||| |||| || | |||||||| |||||||| ||| | ||||||||    
T  29037875 acttgagttgaaaattaagtccgttaaacaaatgagttgaatttaaactatatatggttcgactcgtttgattcatgag 29037953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 49001081 - 49001135
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatat 75  Q
    |||||| |||||||||||||||||||| ||||| | | |||||||| ||||||||    
T  49001081 acttgaactgaaaattaagttcgttaactaaatcaaccgaacttgaactatatat 49001135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 21760678 - 21760755
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| |||||| |||  ||||||| |||||||| ||||||||||||   ||| |||||||| ||||| |||||||    
T  21760678 acttgagttgaaaactaaactcgttaaataaatgagttgaacttgagcttcgtatggttcgactcgttagattcatga 21760755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 30919472 - 30919395
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| |||||| |||  ||||||  |||||||| ||||||||||||   ||| |||||||| |||||||||||||    
T  30919472 acttgagttgaaaactaaactcgttagataaatgagttgaacttgagcttcgtatggttcgactcgttaggttcatga 30919395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 36538717 - 36538447
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||    
T  36538717 gaacctaacgagttggacttgagctgaaaattaagttcgttaattaaatgagctaaacttgagctacatatagttcgactcgttaggttcatgagatgac 36538618  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||        |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  36538617 tcgattattgattatatatataaatcaatttgagttagtttttaaaaaaaattaattcaaatgtgacaaatgtggctgaatacaattttgtcttgaaggg 36538518  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  36538517 aagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaattaattgaattttgttggat 36538447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 41959204 - 41958934
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||||| |||||||| |    
T  41959204 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacataagctacatatagttcgactcgttaggttaatgagatggc 41959105  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||||| |||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41959104 tcgattatcgattatatatataaatcaatttgagttagtttttaaaaaaatttaattcaaatgtggcaaatgtggctgaatacaattttgtcttgaaggg 41959005  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41959004 aagagcagttggagtttaaaattaaaagaatattatgaattttgttcacagctaattgaattttgttggat 41958934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 34064766 - 34064505
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||      
T  34064766 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggt 34064667  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||||| |||||||||||||||||| |||||||||||||||        ||||||         ||||||||||||||||||||||| ||||||||||    
T  34064666 tcgattatcgattatatatataaatcaatttgagttagtttttaaaaaaaattaatt---------caaatgtggctgaatacaattttgtcttgaaggg 34064576  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34064575 aagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggat 34064505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 26436415 - 26436166
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |    
T  26436415 gaacctaacgagctgaacgtgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggc 26436316  T
Q  105 tcgattattgattatatatataaatcagtttgagttagtttttnnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggga 204  Q
    |||||||| |||||||||||||||||| ||| |                 ||||||||||||||         ||||||||||||||| |||||||||||    
T  26436315 tcgattatcgattatatatataaatcaatttaa-----------aaaaaattaattcaaatgtg---------gctgaatacaattttgtcttgaaggga 26436236  T
Q  205 aaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26436235 agagcagttggagtataaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 26436166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 40 - 249
Target Start/End: Complemental strand, 33831453 - 33831252
Alignment:
Q  40 ttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattattgattatatatataaatcagtttgagt 139  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  33831453 ttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatcgattatatatataaatcaatttgagt 33831354  T
Q  140 tagtttttnnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattat 239  Q
    ||||||||         |||| || |    ||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  33831353 tagtttttaaaaa----aatttaatt----caaatgtggctgaatacaattttgtcttgaatggaagagcagttggagtttaaaagtaaaagaatattat 33831262  T
Q  240 gaattttgtt 249  Q
     |||||||||    
T  33831261 aaattttgtt 33831252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 27634732 - 27634611
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||    
T  27634732 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagtttgactcgttaggttcatgagatgac 27634633  T
Q  105 tcgattattgattatatatata 126  Q
    || |||||||||||||||||||    
T  27634632 tccattattgattatatatata 27634611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 33831556 - 33831459
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatg 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  33831556 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatg 33831459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 27633640 - 27633531
Alignment:
Q  165 tgtggcaaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaat 264  Q
    |||||||||||||||||||||||||||| |||||||||||| | || |||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  27633640 tgtggcaaatgtggctgaatacaattttgtcttgaagggaataacaattggagtttagaagtaaaataatattatgaattttgttcacagctaattgaat 27633541  T
Q  265 tttgttggat 274  Q
    ||||||||||    
T  27633540 tttgttggat 27633531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 39690215 - 39690124
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||| || ||| |||| |||||||||||||||| |||||||||| ||| |||||||||||||||||||||||    
T  39690215 acttgagctgaaaattaagttcgtcaactaattgagttgaacttgagctatatgtagttcgactcgtttggttcatgagatgactcgattat 39690124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 44740562 - 44740665
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||||| ||||||||| |||||||||||||||||  |||||||||||||||||||| |||||||||||||| | | |||||||||| ||||    
T  44740562 gaaccaaacgagctgaacttgagctaaaaattaagttcgttaaacaaatgagctgaacttgagctttatatagttcgactcggt-ggttcatgagttgac 44740660  T
Q  105 tcgat 109  Q
    |||||    
T  44740661 tcgat 44740665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 34116268 - 34116359
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||    
T  34116268 acttgagcttaaaattaagttcgctaaataattgagctgaacttgagctatatgtagttcgactcgtttggttcatgtgatgactcgattat 34116359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 3409283 - 3409371
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| | | | |||||||| |||||||||    
T  3409283 acttgagctgaaaattaagttcgttaaataaatgagctgaatttgagctgtatatagttcgactcgattgattcatgagctgactcgat 3409371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 2647053 - 2647160
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||| | ||||||||| ||||||||||||||||| ||||| || |||||||||| |||||||||||||||| ||| ||||||  |  ||||    
T  2647053 gaaccaaacgagccgaacttgagctaaaaattaagttcgttaactaaataagttgaacttgagttatatatagttcgactcgtttggttcacaaactgac 2647152  T
Q  105 tcgattat 112  Q
    ||||||||    
T  2647153 tcgattat 2647160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 33164059 - 33164110
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgag 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33164059 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgag 33164110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 40680263 - 40680178
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||||||| | | ||||||| || |||||||||    
T  40680263 tgagctgaaaattatgttcgttaaataaatgagctgaatttgagttatatatagttcgactcgattggttcataagctgactcgat 40680178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 38409666 - 38409757
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||||||| || || ||| |||||||||||| | |||||||||||||| || ||| |||||| |||||||| |||||||    
T  38409666 acttgagctgaaaattaagtttgtgaactaattgagctgaactttaactatatatagttcggctcgtttggttcacgagatgacccgattat 38409757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 20987845 - 20987768
Alignment:
Q  35 ttaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||| ||||||||||||||| |||| ||||| || |||||| | ||||| |||||||||||||||||||||    
T  20987845 ttaagttcgttgattaaatgagctgaagttgaactataaatggttcgattcgttagattcatgagatgactcgattat 20987768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 40458966 - 40458889
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||| ||||||| |||||||||||||||||| |||  |||||||||||| ||| |||||||||    
T  40458966 acttgagttgaaaattaagctcgttaaataaatgagctgaacttgaactaagtatagttcgactcgtttggttcatga 40458889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 11027953 - 11027873
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagat 101  Q
    |||||| || |||||||||||||| || ||| ||||||||||||||||||||| |||||||||| ||| |||||| |||||    
T  11027953 acttgaactaaaaattaagttcgtcaactaattgagctgaacttgagctatatgtagttcgactcgtttggttcacgagat 11027873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 27902534 - 27902624
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||| | ||| || ||| |||| |||||||||||||||| |||||||||| ||| |||||| ||||| ||||||||||    
T  27902534 acttgagctgaaaattaaat-cgtcaactaattgagttgaacttgagctatatgtagttcgactcgtttggttcacgagataactcgattat 27902624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 30713198 - 30713110
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||| |||||||||| || ||| |||| ||||||||||||||||  ||||||||| ||| |||| | |||| |||||||||||    
T  30713198 tgagctgaaatttaagttcgtcaactaattgagttgaacttgagctatatgcagttcgactcgtttggtttaagagaagactcgattat 30713110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 2578131 - 2578061
Alignment:
Q  14 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||| |||||||||||||||||| |||||||| |||||||| | ||||| |||||||||| | ||||||    
T  2578131 gagctgaacttgagctgaaaattaaattcgttaaataaatgagttaaacttaagctatatatcgatcgact 2578061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 14103305 - 14103251
Alignment:
Q  28 ctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcga 82  Q
    |||||||||||||||||||||||||||||| |||||| | ||||||||| |||||    
T  14103305 ctgaaaattaagttcgttaattaaatgagcagaacttaaactatatatatttcga 14103251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 18667782 - 18667705
Alignment:
Q  35 ttaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||| |||||||| ||||| || |||||||||| |||||||||||||||| ||| ||||||| |  ||||||||||||    
T  18667782 ttaatttcgttaaataaataagttgaacttgagttatatatagttcgactcgtttggttcataaactgactcgattat 18667705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 24844745 - 24844822
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcga 82  Q
    ||||| || |||||| |||||||||||||||||| |||| ||| |||||||||||||||| || | |||||| |||||    
T  24844745 gaaccaaatgagctgaacttgagctgaaaattaaattcgataaataaatgagctgaacttaaggtgtatataattcga 24844822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 9963820 - 9963716
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| || |||||| |||| || | ||||||||||||||||  ||||||||||||||||||| | ||||||||  |||| | | |||||||||| | ||    
T  9963820 gaaccaaatgagctgaacttaagttaaaaattaagttcgttagataaatgagctgaacttgagttgtatatagtctgactcgattggttcatgagctaac 9963721  T
Q  105 tcgat 109  Q
    |||||    
T  9963720 tcgat 9963716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 44935805 - 44935721
Alignment:
Q  28 ctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||| | ||||||||| |||||||||||||||| |  ||||||||||| |||| ||| ||||||| || ||||| ||||||    
T  44935805 ctgaaaatcatgttcgttaactaaatgagctgaacttaaattatatatagtttgactcgtttggttcataagttgacttgattat 44935721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 10412485 - 10412394
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||| | ||||||||| ||||||| |||||||| || |||||||||||||||| | |||||  || ||||||||||   ||||||||||    
T  10412485 acttgagttaaaaattaagctcgttaaataaatgagttggacttgagctatatataatccgactcatttggttcatgagccaactcgattat 10412394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 20986506 - 20986455
Alignment:
Q  223 aagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    ||||| |||||||||||||||| ||||| | |||||||||||||||||||||    
T  20986506 aagtagaagaatattatgaattatgttctcggctaattgaattttgttggat 20986455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 11007067 - 11007142
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcat 96  Q
    ||||||| ||||||||||| ||||||| |||||||| |||||||||  ||  |||| ||||||| ||| |||||||    
T  11007067 acttgagttgaaaattaagctcgttaaataaatgagttgaacttgaaataagtataattcgactcgtttggttcat 11007142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 12084143 - 12084060
Alignment:
Q  27 gctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgatt 110  Q
    ||||||||| ||||| ||||| |||||||||||||| |||| || |||||||| || ||||| |||| || || || |||||||    
T  12084143 gctgaaaatcaagtttgttaactaaatgagctgaacatgagataaatatagtttgatttgtttggtttataagttggctcgatt 12084060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 19589879 - 19589920
Alignment:
Q  31 aaaattaagttcgttaattaaatgagctgaacttgagctata 72  Q
    |||| |||||| |||||||||||||||||||||||| |||||    
T  19589879 aaaaataagtttgttaattaaatgagctgaacttgaactata 19589920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 41332274 - 41332213
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    ||||||||||||||||||| ||||| |||||| || |||| |||| | || |||||||||||    
T  41332274 ttgagctgaaaattaagtttgttaaataaatgggccgaacatgagttgtacatagttcgact 41332213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 29806941 - 29806885
Alignment:
Q  42 cgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    |||||| |||||||| ||||||||||||   ||| |||||||| |||||||||||||    
T  29806941 cgttaaataaatgagttgaacttgagcttcgtatggttcgactcgttaggttcatga 29806885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 56)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 53369740 - 53369479
Alignment:
Q  14 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||     
T  53369740 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggctcgattatc 53369641  T
Q  114 gattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaagggaaaagcagt 212  Q
    |||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||    
T  53369640 gattatatatataaatcaatttgagttagtttttaaaaaaaattaattcaaatgtggcaaatgtggttgaatacaattttgtcttgaaaggaagagcagt 53369541  T
Q  213 tggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53369540 tggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 53369479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 12789631 - 12789901
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||   |||||||| |    
T  12789631 gaacctaacgagctgaacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcaactagttaggaaaatgagatggc 12789730  T
Q  105 tcgattattgattatatatataaatcagtttgagttag-tttttnnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    ||||||||||||||||||||||||||| |||||||||| |||||       ||| |||||||||||||||||||||||||||||||||| |||||||||     
T  12789731 tcgattattgattatatatataaatcaatttgagttagttttttaaaaaaattatttcaaatgtggcaaatgtggctgaatacaattttgtcttgaagga 12789830  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12789831 aagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggat 12789901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 271
Target Start/End: Complemental strand, 49821043 - 49820778
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |    
T  49821043 gaacctaacgagctggacttaagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggc 49820944  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||||| |||||||  ||||||||| |||||||||||||||        |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  49820943 tcgattatcgattata--tataaatcaatttgagttagtttttaaaaaaatttaattcaaatgtgacaaatgtggctgaatacaattttgtcttgaaggg 49820846  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttg 271  Q
    || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49820845 aagagcagttgaagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttg 49820778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 5 - 274
Target Start/End: Original strand, 44791322 - 44791583
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||    
T  44791322 gaacctaacgagctgcacttgaactgaaaattaagttcgttaattaaatgagctgaatttgagctacatatagttcgactcgttaggttcatgagatgac 44791421  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||        ||||||         ||||||||||||||||||||||| ||||||||||    
T  44791422 tcgattattgattatatatataaatcaatttgagttagtttttaaaaaaaattaatt---------caaatgtggctgaatacaattttgtcttgaaggg 44791512  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  44791513 aagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattaaattttgttggat 44791583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 274
Target Start/End: Complemental strand, 45674896 - 45674635
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |    
T  45674896 gaacctaacgagctggacttgagctgaaaattaaattcgttaattaaatgagttgaacttgagctacatatagttcgactcgttaggttcatgagatggc 45674797  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||||| |||||||||||||||||| |||||||||||||||        ||||||         | ||||||| ||||||||||||| ||||||||||    
T  45674796 tcgattatcgattatatatataaatcaatttgagttagtttttaaaaaaaattaatt---------ctaatgtggttgaatacaattttgtcttgaaggg 45674706  T
Q  204 aaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    || |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45674705 aagagcaattggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggat 45674635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 50606069 - 50605841
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||| |    
T  50606069 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggtttatgagatggc 50605970  T
Q  105 tcgattattgattatatatataaatcagtttgagttagtttttnnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggga 204  Q
    ||||||||||||||||||||||||||| |||||||||||||||         ||||         ||||||||||||||||||||||| ||||||| |||    
T  50605969 tcgattattgattatatatataaatcaatttgagttagtttttaa-------aatt---------caaatgtggctgaatacaattttgtcttgaatgga 50605886  T
Q  205 aaagcagttggagtttaaaagtaaaagaatattatgaattttgtt 249  Q
    | |||| ||||| |||||||||||||||||||| |||||||||||    
T  50605885 agagcaattggaatttaaaagtaaaagaatattgtgaattttgtt 50605841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 19853039 - 19852846
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |    
T  19853039 gaacctaacgagatggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggc 19852940  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatctt 197  Q
    |||||||| |||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||||| ||||||||||| ||||    
T  19852939 tcgattatcgattatatatataaatcaatttgagttagtttttaaaattttttaattcaaatgtggcaaatgtggcttaatacaattttctctt 19852846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 53369933 - 53369752
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |    
T  53369933 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggc 53369834  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaata 185  Q
    |||||||| |||||||||||||||||| |||||||||||||||        |||||||||||||||||||||||| ||||||    
T  53369833 tcgattatcgattatatatataaatcaatttgagttagtttttaaaaaattttaattcaaatgtggcaaatgtggttgaata 53369752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 48977637 - 48977436
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||  |    
T  48977637 gaacctaatgagctggacatgagctgaaaattaaattcgttaattaaatgagctgaacttgagctacatatagttcgactcgttcggttcatgagatagc 48977538  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||||| |||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  48977537 tcgattatcgattatatatataaatcaatttgagttagtttttaattttttttaattcaaatgtggcaaatgtggccgaatacaattttgtcttgaaggg 48977438  T
Q  204 aa 205  Q
    ||    
T  48977437 aa 48977436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 21441642 - 21441516
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |    
T  21441642 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggc 21441543  T
Q  105 tcgattattgattatatatataaatca 131  Q
    |||||||||||||||||||||||||||    
T  21441542 tcgattattgattatatatataaatca 21441516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 182 - 274
Target Start/End: Complemental strand, 19850612 - 19850520
Alignment:
Q  182 aatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattttgttggat 274  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19850612 aatacaattttctcttgaagggaagagcagttggagtttaaaagtaaaagaatattatgaattttgttcacaactaattgaattttgttggat 19850520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 36543826 - 36543735
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |||||||||||||||||||||||||||||    
T  36543826 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgaactatagatggttcgatttgttaggttcatgagatgactcgattat 36543735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 9469822 - 9469731
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||| | |||||||||||||||||||||||||||    
T  9469822 acttgagctgaaaattaagttcgttgattaaatgagctgaacttgaactatagatggttcgattcgttaggttcatgagatgactcgattat 9469731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 11055305 - 11055409
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| || |||||| |||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| | | |||||||||| ||||    
T  11055305 gaaccaaatgagctgaacttgagcggaaaattaagttcgttaaataaatgagccgaacttgagctgtatatagttcgactcgattggttcatgagctgac 11055404  T
Q  105 tcgat 109  Q
    |||||    
T  11055405 tcgat 11055409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 52813662 - 52813543
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||  |||||||||||||||||||| |||||||||||| | | | |||||||||| || |    
T  52813662 gaaccaaacgagctgaacttaagctgaaaattaagttcgttaaacaaatgagctgaacttgagctttatatagttcgattcggttggttcatgagttggc 52813563  T
Q  105 tcgattattgattatatatata 126  Q
    ||||| ||  ||||||||||||    
T  52813562 tcgatgat--attatatatata 52813543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 22184564 - 22184485
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    ||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||| || ||||||||||||||    
T  22184564 gaaccaaacgagctgaacttgagctgaaaattaagttcgttaaacaaatgagctgaacttgaactttatatagttcgact 22184485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 50147011 - 50147104
Alignment:
Q  19 ggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||||| || ||| |||||||||||| || ||||| ||||||| || ||| |||||| ||||||||||||||||    
T  50147011 ggacttgagctgaaaattaagttcgtgaactaattgagctgaacttaagttatatgtagttcggctcgtttggttcacgagatgactcgattat 50147104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 48339194 - 48339282
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||||||||||||||||||||||| || ||| |||||||||||| |||||||| |||||||||| ||| |||||| ||||| |||||||    
T  48339194 acttgagctgaaaattaagttcgtcaactaattgagctgaacttaagctatatgtagttcgactcgtttggttcacgagataactcgat 48339282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 52706278 - 52706171
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||| ||||||| | ||||||||| || |||||||||||||| |||||||| |||||||||| |||||||||||||||| ||| | |||| ||  ||||    
T  52706278 gaaccaaacgagccgaacttgagctaaagattaagttcgttaactaaatgagttgaacttgagttatatatagttcgactcgtttgattcacgaactgac 52706179  T
Q  105 tcgattat 112  Q
    ||||||||    
T  52706178 tcgattat 52706171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 16742423 - 16742508
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||| ||||||||||||||||||| ||||||||||||||||||| | |||||||||||| | | | |||||||||| |||||||||    
T  16742423 tgagttgaaaattaagttcgttaaataaatgagctgaacttgagttgtatatagttcgattcgattggttcatgagctgactcgat 16742508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 19455246 - 19455327
Alignment:
Q  14 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttca 95  Q
    |||||| ||||||| ||||||||||||| ||||  |||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  19455246 gagctgaacttgagttgaaaattaagtttgttatctaaatgagttgaacttgagctatatacagttcgacttgtttggttca 19455327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 24007982 - 24008075
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    |||||||||||| |  ||||||| | ||||||||||||||||| |||||||| ||||||||||||| |||| |||||||| ||| |||||||||    
T  24007982 gaacctaacgagttaaacttgagtttaaaattaagttcgttaaataaatgagttgaacttgagctaaatatggttcgactcgtttggttcatga 24008075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 22721363 - 22721296
Alignment:
Q  31 aaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||| |||||||||    
T  22721363 aaaattaagttcgttaaataaatgagttgaacttgagttatatatagttcgactcgtttggttcatga 22721296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 26632988 - 26632893
Alignment:
Q  14 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||||| ||||||||||||||||||||||||||| ||||||||| ||||||||  || ||||||| ||||||  | |||||||||| || ||||||    
T  26632988 gagctgaacttgagctgaaaattaagttcgttaaataaatgagccgaacttgaattacatatagtccgacttagttggttcatgagttggctcgat 26632893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 36156389 - 36156480
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||| || ||| |||||||||||||| |||||| |||||||||| ||| |||||| || || | ||||||||    
T  36156389 acttgagctgaaaattaagttcgtcaactaattgagctgaacttgaactatatgtagttcgactcgtttggttcacgacataaatcgattat 36156480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 49378093 - 49378168
Alignment:
Q  165 tgtggcaaatgtggctgaatacaattttatcttgaagggaaaagcagttggagtttaaaagtaaaagaatattatg 240  Q
    |||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||  ||||| ||||||||||||    
T  49378093 tgtggcaaatgtggctgaatacaattttgtctttaagggaagagcaattggagtttggaagtagaagaatattatg 49378168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 56224190 - 56224115
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcat 96  Q
    |||||||||||||||||| |||||||||||||| || ||||||||| ||||||||| ||||| ||||| |||||||    
T  56224190 acttgagctgaaaattaaattcgttaattaaataagttgaacttgaactatatataattcgatttgtttggttcat 56224115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 6866198 - 6866264
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgt 87  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||||||| |||||| ||||||    
T  6866198 acttgagctgaaaattaagttcgtcaactaattgagctgaacttgagctatatgtagttcaacttgt 6866264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 32397793 - 32397899
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattattgat-tat 119  Q
    |||||| || |||||||||||||| || ||| |||||||||||||| |||||| ||| |||||| ||| | |||| ||||||||||||||||| || |||    
T  32397793 acttgaactaaaaattaagttcgtcaactaattgagctgaacttgaactatatgtagctcgactcgtttgattcacgagatgactcgattatttatatat 32397892  T
Q  120 atatata 126  Q
    |||||||    
T  32397893 atatata 32397899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 49083314 - 49083392
Alignment:
Q  6 aacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    ||||||| ||| || |||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||||||    
T  49083314 aacctaatgagttgaacttgatctgaaaattaaattcgttaattaaatgagctgtacttgagttatatatagctcgact 49083392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 15697172 - 15697269
Alignment:
Q  15 agctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||| ||||||||| ||||||||||||||||| | |||||||||||| ||| ||| | ||||| ||||| ||| |||||||||| ||| ||||||||    
T  15697172 agctgaacttgagctaaaaattaagttcgttaacttaatgagctgaacatgaactaaacatagtccgactcgtttggttcatgagttgattcgattat 15697269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 38493075 - 38493147
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcat 96  Q
    |||||||||||||||||| |||||||||||||| |||||||||| |||||||| || |||| ||| |||||||    
T  38493075 tgagctgaaaattaagtttgttaattaaatgagttgaacttgagttatatataatttgactcgtttggttcat 38493147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 112
Target Start/End: Original strand, 43812159 - 43812243
Alignment:
Q  28 ctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||| || ||| |||||||||||||| ||| || |||||||||| |||  ||||| ||||||||||||||||    
T  43812159 ctgaaaattaagttcgtaaactaattgagctgaacttgaactagatgtagttcgactcgtttagttcacgagatgactcgattat 43812243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 43387308 - 43387210
Alignment:
Q  26 agctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattattgattatatatat 125  Q
    ||||||||||||| | ||||||  ||||||||||||||||| || |||||||||||||| | | |||||||||| || |||||| ||  |||||||||||    
T  43387308 agctgaaaattaaatccgttaaacaaatgagctgaacttgaactttatatagttcgactcggttggttcatgagttggctcgataat--attatatatat 43387211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 27285678 - 27285618
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||| |||||||| |||| |||||||||||||| | |||||||||||||||||||||||||    
T  27285678 tgagttgaaaatttagtttgttaattaaatgagttaaacttgagctatatatagttcgact 27285618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 48731268 - 48731356
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||  |||| ||||||| | |  || ||||||| ||||| ||||||    
T  48731268 acttgagctaaaaattaagttcgttaattaaatgagctgtacttgaattatagatagttcaattcatttggttcataagatggctcgat 48731356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 27891439 - 27891344
Alignment:
Q  14 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||||| ||||||||||||||| || || ||||| ||||||||||||| ||||  | |||||||||||||| | | |||||||||| | |||||||    
T  27891439 gagctgaacttgagctgaaaatcaaatttgttaaataaatgagctgaatttgaattttatatagttcgactcggttggttcatgagctaactcgat 27891344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 48151201 - 48151279
Alignment:
Q  1 tcacgaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagtt 79  Q
    |||| |||| || |||||| ||||||||||||||||||||||||||| ||||| ||  ||||||||| | |||||||||    
T  48151201 tcacaaaccaaatgagctgaacttgagctgaaaattaagttcgttaaataaataagtcgaacttgagttgtatatagtt 48151279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 24550122 - 24550049
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttc 94  Q
    ||||||||| ||||||||||| ||||| |||||||| |||||||||| ||| ||||| |||||| ||| |||||    
T  24550122 acttgagctaaaaattaagtttgttaactaaatgagttgaacttgagttatgtatagctcgactcgtttggttc 24550049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 25134619 - 25134542
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||| ||   ||| |||||||| ||| |||||||||    
T  25134619 acttgagttgaaaattaagttcgttaaataaatgagttgaacttgaacttagtatggttcgactcgtttggttcatga 25134542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 34718184 - 34718120
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgactt 85  Q
    |||| ||||||||||||| |||||||| ||||| |||| || ||||||| |||||||||||||||    
T  34718184 acttcagctgaaaattaatttcgttaaataaataagcttaaattgagctgtatatagttcgactt 34718120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 38791748 - 38791676
Alignment:
Q  50 aaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattattgattatata 122  Q
    |||||||||||||||||||| ||||||||| |||| | | |||||||||| ||||||||| || ||| |||||    
T  38791748 aaatgagctgaacttgagctgtatatagtttgactcggttggttcatgagctgactcgataatcgataatata 38791676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 43798328 - 43798396
Alignment:
Q  31 aaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    ||||| ||| || |||| |||||||| |||||||||||||| |||||||||||| ||| ||||||||||    
T  43798328 aaaatgaagatcattaaataaatgagttgaacttgagctatgtatagttcgactcgtttggttcatgag 43798396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 48802571 - 48802659
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||||||  |||||||||| |||| || ||||||||| |||||||||||||  ||||||||||| ||| |||||| ||||  |||||||    
T  48802571 acttgagtcgaaaattaagctcgtcaaataaatgagccgaacttgagctatgaatagttcgactcgtttggttcacgagacaactcgat 48802659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 9959385 - 9959342
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgag 67  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  9959385 tgagctgaaaattaagttcgttaaataaataagctgaacttgag 9959342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 274
Target Start/End: Complemental strand, 48977434 - 48977399
Alignment:
Q  239 tgaattttgttcacagctaattgaattttgttggat 274  Q
    ||||||||||||||||||||||||||||||||||||    
T  48977434 tgaattttgttcacagctaattgaattttgttggat 48977399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 4274680 - 4274786
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgatta-ttgattat 119  Q
    |||| |||| ||||||||||| ||||  |||| ||||||||| | | ||||||||||||||||| ||| | |||||||  | ||||||||| | ||||||    
T  4274680 acttcagctaaaaattaagtttgttagctaaacgagctgaacattaactatatatagttcgactcgtttgattcatgaactaactcgattactcgattat 4274779  T
Q  120 atatata 126  Q
    |||||||    
T  4274780 atatata 4274786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 80542 - 80465
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||| |||| || ||||||||| |||||||| |||  |||| ||||||| ||| |||||||||    
T  80542 acttgagttgaaaattaagctcgtcaaataaatgagccgaacttgaactacgtataattcgactcgtttggttcatga 80465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 25608823 - 25608734
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||| ||||||||||    |||||||||  |||||||| ||||| ||||| | ||||| || |||||| |||||    
T  25608823 ttgagctgaaaattaagttcattaattaaatagattgaacttgaattatatataattcgatttgtttgtttcattagttgactctattat 25608734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 40797875 - 40797798
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||| ||||||| |||||||| ||||||||| ||   ||| |||||||| ||| |||||||||    
T  40797875 acttgagttgaaaattaagctcgttaaataaatgagttgaacttgaacttagtatggttcgactcgtttggttcatga 40797798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 44378287 - 44378218
Alignment:
Q  29 tgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||||||| ||||||| |||||||| |||||||||||||  |||| ||||||| ||  |||||||||    
T  44378287 tgaaaattaagctcgttaaataaatgagttgaacttgagctaagtataattcgactcgtctggttcatga 44378218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 41822153 - 41822101
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatata 76  Q
    |||| ||||||||||||| ||||| |||||||||||||||| | |||||||||    
T  41822153 tgagttgaaaattaagtttgttaactaaatgagctgaacttaaactatatata 41822101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 13455746 - 13455696
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctat 71  Q
    ||||||||| ||||||||||||||||| |||| ||| ||||||||| ||||    
T  13455746 acttgagctcaaaattaagttcgttaaataaacgagttgaacttgaactat 13455696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 52733797 - 52733838
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaactt 64  Q
    ||||||||||||||||||||||||| ||||| || |||||||    
T  52733797 ttgagctgaaaattaagttcgttaaataaataagttgaactt 52733838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 5762642 - 5762697
Alignment:
Q  23 ttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagtt 79  Q
    |||||||||||||||| |||||||| |||||| ||||| ||| | ||||||||||||    
T  5762642 ttgagctgaaaattaaattcgttaaataaatg-gctgagcttcaactatatatagtt 5762697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 28265775 - 28265843
Alignment:
Q  31 aaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgag 99  Q
    |||||||||||||| ||  ||||||| ||||||||||| |  | |||||||||| ||| ||||||||||    
T  28265775 aaaattaagttcgtcaaacaaatgagttgaacttgagccaagtgtagttcgactcgtttggttcatgag 28265843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 11161633 - 11161397
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |    
T  11161633 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctacatatagttcgactcgttaggttcatgagatggc 11161534  T
Q  105 tcgattattgattatatatataaatcagtttgagttagtttttnnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggga 204  Q
    |||||||| |||||||||||||||||| |||||||||||||||       ||  || || |    ||||||||||||||||||||||| |||||||||||    
T  11161533 tcgattatggattatatatataaatcaatttgagttagttttt----aaatttgtttaatt----caaatgtggctgaatacaattttgtcttgaaggga 11161442  T
Q  205 aaagcagttggagtttaaaagtaaaagaatattatgaattttgtt 249  Q
    | |||||||| ||||||||||||||| ||||||||||||||||||    
T  11161441 agagcagttgaagtttaaaagtaaaataatattatgaattttgtt 11161397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 453544 - 453289
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgac 104  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |    
T  453544 gaacctaacgagctggacttgagttgaaaattaagttcgttaattaaatgagttgaacttgagctacatatagttcgactcgttaggttcatgagatggc 453445  T
Q  105 tcgattattgattatatatataaatcagtttgagttagttttt-nnnnnnnttaattcaaatgtggcaaatgtggctgaatacaattttatcttgaaggg 203  Q
    |||||||| |||||||||||||||||| |||||||||||||||        ||||||         ||||||||||||||||||||||| ||||||||||    
T  453444 tcgattatcgattatatatataaatcaatttgagttagtttttaaaaaaaattaatt---------caaatgtggctgaatacaattttgtcttgaaggg 453354  T
Q  204 a--aaagcagttggagtttaaaagtaaaagaatattatgaattttgttcacagctaattgaattt 266  Q
    |  | ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  453353 aagagagcagttggagtttaaaagtaaaagaatattatgaattttgttcataactaattgaattt 453289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 34516183 - 34516092
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||||||||||  ||||| |||||||||||||| |||||| |||||||||| ||| |||||| ||||||||||||||||    
T  34516183 acttgagctgaaaattaagttcgtcgattaattgagctgaacttgaactatatgtagttcgactcgtttggttcacgagatgactcgattat 34516092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 43967571 - 43967481
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttca 95  Q
    ||||| ||||||| | ||||||||| || |||||||||||||| |||||||| |||||||||| |||||||||||||||| ||| ||||||    
T  43967571 gaaccaaacgagccgaacttgagctaaagattaagttcgttaactaaatgagttgaacttgagttatatatagttcgactcgtttggttca 43967481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 3307979 - 3307916
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||||| |||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  3307979 acttgagcagaaaattaagttcgttaaataaatgagccgaacttgagctgtatatagttcgact 3307916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 10749314 - 10749377
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||||||||| ||||||||||    
T  10749314 acttgagctgaaaattaagttcgtcaactaattgagctgaacttgagctatatgtagttcgact 10749377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 34655080 - 34654989
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||| || |||||||| ||||| |||||||| | |||||||| |||||||||||||||| ||| |||||| ||  ||||||||||||    
T  34655080 acttgagctaaagattaagtttgttaactaaatgagttaaacttgagttatatatagttcgactcgtttggttcacgaactgactcgattat 34654989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 27189177 - 27189268
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    |||||||||||||||||||||||| || ||| |||| |||||||||| ||||| || ||||| |  || |||||| | ||||||||||||||    
T  27189177 acttgagctgaaaattaagttcgtcaactaattgagttgaacttgagttatatgtaattcgattcatttggttcacgggatgactcgattat 27189268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 9412603 - 9412682
Alignment:
Q  5 gaacctaacgagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    ||||| || |||||| ||||||| ||| |||||| |||||||  ||||||||||||| ||||| |||||||| |||||||    
T  9412603 gaaccaaatgagctgaacttgagttgagaattaaattcgttacataaatgagctgaatttgagttatatataattcgact 9412682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 23181200 - 23181137
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||| ||||||||||||||||| || ||| |||||||||||||| ||| || ||||||||||    
T  23181200 acttgaactgaaaattaagttcgtaaactaattgagctgaacttgaactagatgtagttcgact 23181137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 33280075 - 33280146
Alignment:
Q  24 tgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttca 95  Q
    |||||| |||||||||||||| || ||| |||||||||||||| |||||| ||||| |||| ||| ||||||    
T  33280075 tgagcttaaaattaagttcgtcaactaattgagctgaacttgaactatatgtagttagactcgtttggttca 33280146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 9136003 - 9135942
Alignment:
Q  15 agctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatata 76  Q
    ||||| ||||||||||||| ||||||| ||||| ||||||| ||| |||||| |||||||||    
T  9136003 agctgaacttgagctgaaatttaagtttgttaactaaatgaactggacttgatctatatata 9135942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 35058359 - 35058297
Alignment:
Q  14 gagctggacttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatata 76  Q
    |||||| ||||||||||||||| ||||| ||||| |||||||  |||| |||| |||||||||    
T  35058359 gagctgaacttgagctgaaaatcaagtttgttaactaaatgatttgaatttgatctatatata 35058297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 43955920 - 43955982
Alignment:
Q  50 aaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||| ||||||||||| |||||||| || | ||||| || | ||||||||||    
T  43955920 aaatgagctgaacttaagctatatataattcgacttatttgattcataagttaactcgattat 43955982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 22564051 - 22563974
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||| ||||||||||| |||| || | ||||| | |||||||| ||| ||||| ||||||| ||| |||||||||    
T  22564051 acttgagttgaaaattaagctcgtcaaatgaatgaaccgaacttgaactacatataattcgactcgtttggttcatga 22563974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 7403 - 7494
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||||||||| ||| ||| |||||||||||||| | |||||||| |||||| ||| |||||||||||||||||||||||    
T  7403 acttgagctgaaaattaagttcgctaactaattgagctgaacttgaaccatatataggtcgactcgtttggttcatgagatgactcgattat 7494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 26716 - 26804
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgat 109  Q
    |||||||||||||||||||||||| || ||| |||||||||||| |||||||| |||||||||| ||| |||||| ||||| |||||||    
T  26716 acttgagctgaaaattaagttcgtcaactaattgagctgaacttaagctatatgtagttcgactcgtttggttcacgagataactcgat 26804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 11506 - 11439
Alignment:
Q  29 tgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcat 96  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||| |||||||    
T  11506 tgaaaattaagttcgttaattaaatgagctgaatttgaactatatataattcgactcgtttggttcat 11439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 112
Target Start/End: Complemental strand, 10026 - 9945
Alignment:
Q  29 tgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgactcgattat 112  Q
    ||||||||||||||||||||||||||||||||| |||  |  |||||| ||||||| ||| ||||||| || ||||||||||||    
T  10026 tgaaaattaagttcgttaattaaatgagctgaatttgtac--tatataattcgactcgtttggttcatcagttgactcgattat 9945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 105
Target Start/End: Original strand, 124576 - 124660
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatgagatgact 105  Q
    |||||||||||  |||||||| ||||||||||||||||||| |||| ||||| ||| ||||| | ||| ||||||||||||||||    
T  124576 acttgagctgattattaagtttgttaattaaatgagctgaatttgaactatagatatttcgattcgtttggttcatgagatgact 124660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 25667 - 25721
Alignment:
Q  28 ctgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcga 82  Q
    ||||||||||||| ||||||||||||||| |||||||||  ||||||||||||||    
T  25667 ctgaaaattaagtccgttaattaaatgagatgaacttgaattatatatagttcga 25721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 11425 - 11376
Alignment:
Q  31 aaaattaagttcgttaattaaatgagctgaacttgagctatatatagttc 80  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||||||    
T  11425 aaaattaagttcgttaaataaatgagccgaacttaagctatatatagttc 11376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0954 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 291 - 342
Alignment:
Q  33 aattaagttcgttaattaaatgagctgaacttgagctatatatagttcgact 84  Q
    |||||||||||||||||||||||| |||||||||| |||| | |||||||||    
T  291 aattaagttcgttaattaaatgagttgaacttgagttatagacagttcgact 342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 870 - 939
Alignment:
Q  29 tgaaaattaagttcgttaattaaatgagctgaacttgagctatatatagttcgacttgttaggttcatga 98  Q
    ||||||||||| ||||||| |||||||| |||||||||||||  |||| ||||||| ||  |||||||||    
T  870 tgaaaattaagctcgttaaataaatgagttgaacttgagctaagtataattcgactcgtctggttcatga 939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 21133 - 21084
Alignment:
Q  21 acttgagctgaaaattaagttcgttaattaaatgagctgaacttgagcta 70  Q
    ||||||| ||||||||||| || |||| |||||||| |||||||||||||    
T  21133 acttgagttgaaaattaagctcattaaataaatgagttgaacttgagcta 21084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University