View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19955_low_15 (Length: 257)
Name: NF19955_low_15
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 5333081 - 5333248
Alignment:
| Q |
1 |
gtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaacaaagtacaaaagccagaaaccttcatgatgtcactaaaacctcaaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5333081 |
gtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaacaaagtacaaaagccagaaaccttcatgatgtcactaaaacctcaaaatg |
5333180 |
T |
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| Q |
101 |
acccttctttctaaaccctaaaccagaaaaagatagtactaagatgttgaagagaggaggaaggtaac |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5333181 |
acccttctttctaaaccctaaaccagaaaaagatagtattaagatgttgaagagaggaggaaggtaac |
5333248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 5350800 - 5350967
Alignment:
| Q |
1 |
gtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaacaaagtacaaaagccagaaaccttcatgatgtcactaaaacctcaaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5350800 |
gtggtacttttgaagctaaaaaaggtaaaagctgccacaaccatcaagaacaaagtacaaaagccagaaaccttcatgatgtcactaaaacctcaaaatg |
5350899 |
T |
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| Q |
101 |
acccttctttctaaaccctaaaccagaaaaagatagtactaagatgttgaagagaggaggaaggtaac |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5350900 |
acccttctttctaaaccctaaaccagaaaaagatagtattaagatgttgaagagaggaggaaggtaac |
5350967 |
T |
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