View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19955_low_16 (Length: 254)
Name: NF19955_low_16
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_low_16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 5332335 - 5332570
Alignment:
| Q |
16 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnn |
115 |
Q |
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| T |
5332335 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt |
5332434 |
T |
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| Q |
116 |
nnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccggannnnn |
215 |
Q |
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| T |
5332435 |
tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccgga---tt |
5332531 |
T |
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| Q |
216 |
nnnnnngaagtttcaaagtgttgtaaaaaacacattgac |
254 |
Q |
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| T |
5332532 |
ttttttgaagtttcaaagtgttgtcaaaaacacattgac |
5332570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 5350054 - 5350289
Alignment:
| Q |
16 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcctgaaccaactannnnnnnnnnnnnn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5350054 |
aatatgatgcaagacataaataaccttgacatcgttgtcaaagttttggtagagaccatttttgaaatcttggcatgaaccaactattttttaatatttt |
5350153 |
T |
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| Q |
116 |
nnnactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttgagtttgataaaattttagtgaccccggannnnn |
215 |
Q |
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| T |
5350154 |
tttactaatgaactatcgtagcttcaacatgcaatatcgatgtttatcatgtgcatatttgtatttttgtttgataaaattttagtggccccgga---tt |
5350250 |
T |
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| Q |
216 |
nnnnnngaagtttcaaagtgttgtaaaaaacacattgac |
254 |
Q |
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| T |
5350251 |
ttttttgaagtttcaaagtgttgtcaaaaacacattgac |
5350289 |
T |
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