View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19955_low_2 (Length: 498)
Name: NF19955_low_2
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 227 - 491
Target Start/End: Original strand, 41192695 - 41192959
Alignment:
| Q |
227 |
gtatgtagagtaaggataacgtgagtatgatatgtttttgatgtgatcaattaataatgatagagtatagtcgattgtacggactagctaagccgtcaaa |
326 |
Q |
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| T |
41192695 |
gtatgtagagtaaggataacgtgagtatgatatgtctttgatgtgatcaataaataatgatagagtatagttgattgtacggactagctaagccatcaaa |
41192794 |
T |
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| Q |
327 |
atcattcaacaataaaaacaaggttggcccttcaataaggtagacatgtgccacttacaacacattatttggttaaattcatatcacacagcagggaggg |
426 |
Q |
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| T |
41192795 |
atcattcaacaataaaaacaaggttggcccttcaataaggtagacatgtgccacttacaacacattatttggttaaattcatatcacacagcagggaggg |
41192894 |
T |
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| Q |
427 |
ataataaagaaactagggatttgattacttgatgtggtaggagatttttgattgtggcctatgct |
491 |
Q |
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| T |
41192895 |
ataataaagaaactagggatttgattacttgatgtggtaggagatttttgattgtggcctatgct |
41192959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 16 - 163
Target Start/End: Original strand, 41192500 - 41192631
Alignment:
| Q |
16 |
acgtcacttttacaacaatccacaaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcatagtttaacaaggtcatataatgctttgg |
115 |
Q |
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| T |
41192500 |
acgtcacttttacaacaatccacaaactttaagatgaattttgtcaggagacaaacaaatgttgtc----------------ggtcatataatgctttgg |
41192583 |
T |
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| Q |
116 |
tgtaaattaataaacctctttacatactgctaaattattcacttaaac |
163 |
Q |
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| T |
41192584 |
tgtaaattaataaacctctttacatactgcttaattattcacttaaac |
41192631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 38176377 - 38176303
Alignment:
| Q |
18 |
gtcacttttacaacaatccacaaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcatagttt |
92 |
Q |
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| T |
38176377 |
gtcactattacaacaatttacaaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagttt |
38176303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 34212747 - 34212827
Alignment:
| Q |
18 |
gtcacttttacaacaatccacaaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcatagtttaacaag |
98 |
Q |
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| T |
34212747 |
gtcacttttacaacaattcacaaactttaagataaattttgttaggagacaagcgaatgttgtcgcttatagcttagcaag |
34212827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 28626484 - 28626417
Alignment:
| Q |
25 |
ttacaacaatccacaaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcatagttt |
92 |
Q |
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| T |
28626484 |
ttacaacaatgtacaaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagttt |
28626417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 4318857 - 4318783
Alignment:
| Q |
18 |
gtcacttttacaacaatccacaaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcatagttt |
92 |
Q |
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| T |
4318857 |
gtcactattacaaaaatttacaaactttaagataagttttgttaggagacaagtaaatgttgtcgctcatagttt |
4318783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 8618454 - 8618373
Alignment:
| Q |
18 |
gtcacttttacaacaatccacaaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcatagtttaacaagg |
99 |
Q |
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| T |
8618454 |
gtcacttttacaacaattcacaaacttcaagataagttttgttaggagacaagcgaatgttgtcgctcatagcttagcaagg |
8618373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 2704076 - 2704017
Alignment:
| Q |
39 |
aaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcatagtttaacaag |
98 |
Q |
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| T |
2704076 |
aaactttaagataagttttgttaggagacaagcaaattatgtcgctcatactttaacaag |
2704017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 11743954 - 11744005
Alignment:
| Q |
38 |
caaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcatag |
89 |
Q |
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| T |
11743954 |
caaactttaagataaattttgtaaggagacaaacaaattatgtcgctgatag |
11744005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 44585867 - 44585786
Alignment:
| Q |
18 |
gtcacttttacaacaatccacaaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcatagtttaacaagg |
99 |
Q |
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| T |
44585867 |
gtcacttttataactattcacaaactttaagataagttttgtcaggagacagacgaatgttgtcgctcatagcttagcaagg |
44585786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 46342945 - 46343015
Alignment:
| Q |
18 |
gtcacttttacaacaatccacaaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcata |
88 |
Q |
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| T |
46342945 |
gtcacttttacaacaattcacaaactctaagataagttttgttaggagacaagcgaatgttgtcgctcata |
46343015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 1527244 - 1527318
Alignment:
| Q |
18 |
gtcacttttacaacaatccacaaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcatagttt |
92 |
Q |
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|||||| |||||||||| |||||||||||||| | |||||| ||||||||| | |||||||||||||||||||| |
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| T |
1527244 |
gtcactattacaacaatttacaaactttaagataagttttgttaggagacaagcgaatgttgtcgctcatagttt |
1527318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 25500951 - 25501012
Alignment:
| Q |
38 |
caaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcatagtttaacaagg |
99 |
Q |
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| T |
25500951 |
caaactttaagataaattatgtaaggagacaagcaaattgtgtcgcccatagtttagcaagg |
25501012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 22497780 - 22497710
Alignment:
| Q |
18 |
gtcacttttacaacaatccacaaactttaagatgaattttgtcaggagacaaacaaatgttgtcgctcata |
88 |
Q |
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||||||||| ||||||| ||||||||||||||| | |||||| ||||||||| | ||||||||| |||||| |
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| T |
22497780 |
gtcacttttgcaacaattcacaaactttaagataagttttgttaggagacaagcgaatgttgtcactcata |
22497710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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