View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19955_low_20 (Length: 226)
Name: NF19955_low_20
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 32463825 - 32463932
Alignment:
| Q |
104 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaagaatctgagcatcacttgtaggagatggtgctgga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32463825 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaagaatctgagcatcacttgtaggagaaggtgctgga |
32463924 |
T |
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| Q |
204 |
gacatatc |
211 |
Q |
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|||||||| |
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| T |
32463925 |
gacatatc |
32463932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 32456648 - 32456755
Alignment:
| Q |
104 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaagaatctgagcatcacttgtaggagatggtgctgga |
203 |
Q |
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|||||| |||||||||||||| |||| ||| |||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |
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| T |
32456648 |
tcaatgaaacatgtatgtaataaccagcgctaccaacataagagaataagcaattccttgatccagaatctgagcatcactagtaggagtaggtgctgga |
32456747 |
T |
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| Q |
204 |
gacatatc |
211 |
Q |
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|| ||||| |
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| T |
32456748 |
gaaatatc |
32456755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 32461143 - 32461250
Alignment:
| Q |
104 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaagaatctgagcatcacttgtaggagatggtgctgga |
203 |
Q |
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|||||| | ||||||||||||||||| ||| |||| ||||||| | ||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
32461143 |
tcaatgaagcatgtatgtaatcaccagcgcgaccaccataagagaataagcaattacttgatcaagactctgagcatcacttgtaggagtaggtgctgga |
32461242 |
T |
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| Q |
204 |
gacatatc |
211 |
Q |
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|| ||||| |
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| T |
32461243 |
gaaatatc |
32461250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 211
Target Start/End: Original strand, 32440033 - 32440140
Alignment:
| Q |
104 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaagaatctgagcatcacttgtaggagatggtgctgga |
203 |
Q |
| |
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|||||||| |||||||||||| |||| |||||| ||||||||||| |||||||| ||||||| |||||||||||| ||| ||||||| ||||||||| |
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| T |
32440033 |
tcaatggagcatgtatgtaatgaccagcgccactaacataagaaaacaagcaattacttgatccagaatctgagcaccaccggtaggagtaggtgctgga |
32440132 |
T |
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| Q |
204 |
gacatatc |
211 |
Q |
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|| ||||| |
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| T |
32440133 |
gaaatatc |
32440140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 43600881 - 43600817
Alignment:
| Q |
104 |
tcaatggaacatgtatgtaatcaccaacgccaccaacataagaaagtaagcaattccttgatcaa |
168 |
Q |
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|||||||||||| ||||| |||| | ||||||| ||| || |||||||||||||||||||||| |
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| T |
43600881 |
tcaatggaacatatatgtgatcagaagagccaccagcatgaggaagtaagcaattccttgatcaa |
43600817 |
T |
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