View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19955_low_22 (Length: 201)

Name: NF19955_low_22
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19955_low_22
NF19955_low_22
[»] scaffold0224 (1 HSPs)
scaffold0224 (10-182)||(12268-12439)
[»] chr1 (2 HSPs)
chr1 (10-182)||(42934332-42934503)
chr1 (128-177)||(16302642-16302691)
[»] chr3 (3 HSPs)
chr3 (104-182)||(42029222-42029301)
chr3 (118-182)||(44713337-44713401)
chr3 (140-182)||(39439834-39439876)
[»] chr2 (2 HSPs)
chr2 (104-182)||(28219131-28219210)
chr2 (127-182)||(1499183-1499238)
[»] chr5 (2 HSPs)
chr5 (104-182)||(4943640-4943719)
chr5 (29-69)||(4943750-4943790)
[»] chr4 (2 HSPs)
chr4 (110-182)||(21263526-21263599)
chr4 (137-182)||(50859280-50859325)
[»] chr8 (1 HSPs)
chr8 (137-182)||(5358201-5358246)


Alignment Details
Target: scaffold0224 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 12268 - 12439
Alignment:
Q  10 agcagagaggcagtggacaagagttggagaagatgaggagataaaataaaaaggatgatgaggnnnnnnnncgagggaagcatgcgcacccaaatgaaag 109  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||        |||||||||||||||| |||||||||||     
T  12268 agcagagaggcagtgtacaagagttggagaagatgaggagataaaataaaaaggctgatgaggaaaaaaa-cgagggaagcatgcgcgcccaaatgaaat 12366  T
Q  110 tggggaatgaaaaatgaggacaaaatggtaattatattattgatgtcttccattccattggatacacctcaaa 182  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  12367 tggggaatgaaaaataaggacaaaatggtaattatattattgatgtgttccattctattggatacacctcaaa 12439  T

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Target: chr1 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 42934503 - 42934332
Alignment:
Q  10 agcagagaggcagtggacaagagttggagaagatgaggagataaaataaaaaggatgatgaggnnnnnnnncgagggaagcatgcgcacccaaatgaaag 109  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||        |||||||||||||||| |||||||||||     
T  42934503 agcagagaggcagtgtacaagagttggagaagatgaggagataaaataaaaaggctgatgaggaaaaaaa-cgagggaagcatgcgcgcccaaatgaaat 42934405  T
Q  110 tggggaatgaaaaatgaggacaaaatggtaattatattattgatgtcttccattccattggatacacctcaaa 182  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  42934404 tggggaatgaaaaataaggacaaaatggtaattatattattgatgtgttccattctattggatacacctcaaa 42934332  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 16302642 - 16302691
Alignment:
Q  128 gacaaaatggtaattatattattgatgtcttccattccattggatacacc 177  Q
    |||||||| ||||||||| |||| |||| |||||||||||| ||||||||    
T  16302642 gacaaaattgtaattataatattaatgtgttccattccatttgatacacc 16302691  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 42029222 - 42029301
Alignment:
Q  104 tgaaagtggggaatgaaaaatgaggacaaaatggtaattatattattgatgt-cttccattccattggatacacctcaaa 182  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||| ||||    
T  42029222 tgaaattggggaatgaaaattgaggacaaaatggtaattatattattaatgtggttccattccattggatacaccccaaa 42029301  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 44713401 - 44713337
Alignment:
Q  118 gaaaaatgaggacaaaatggtaattatattattgatgtcttccattccattggatacacctcaaa 182  Q
    |||||||  ||||||||| |||||||||| |||||| | |||||||||||| |||||||| ||||    
T  44713401 gaaaaatagggacaaaattgtaattatataattgatatgttccattccattagatacaccccaaa 44713337  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Original strand, 39439834 - 39439876
Alignment:
Q  140 attatattattgatgtcttccattccattggatacacctcaaa 182  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||    
T  39439834 attatattatttatgtattccattccattggatacaccccaaa 39439876  T

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Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 28219210 - 28219131
Alignment:
Q  104 tgaaagtggggaatgaaaaatgaggacaaaatggtaattatattattgatgt-cttccattccattggatacacctcaaa 182  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||| ||||    
T  28219210 tgaaattggggaatgaaaattgaggacaaaatggtaattatattattaatgtggttccattccattggatacaccccaaa 28219131  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 1499183 - 1499238
Alignment:
Q  127 ggacaaaatggtaattatattattgatgtcttccattccattggatacacctcaaa 182  Q
    ||||||||| |||||| ||||||  |||  ||||||||||||||||||||||||||    
T  1499183 ggacaaaattgtaattgtattataaatgcattccattccattggatacacctcaaa 1499238  T

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Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 4943719 - 4943640
Alignment:
Q  104 tgaaagtggggaatgaaaaatgaggacaaaatggtaattatattattgatgt-cttccattccattggatacacctcaaa 182  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| ||||  ||||||||||||||| ||||| ||||    
T  4943719 tgaaattggggaatgaaaagtgaggacaaaatggtaattatattattaatgtggttccattccattggaaacaccccaaa 4943640  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 4943790 - 4943750
Alignment:
Q  29 agagttggagaagatgaggagataaaataaaaaggatgatg 69  Q
    |||||||||||||||||||||||  |||||||||| |||||    
T  4943790 agagttggagaagatgaggagatggaataaaaaggttgatg 4943750  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 21263526 - 21263599
Alignment:
Q  110 tggggaatgaaaaatgaggacaaaatggtaattatattattgatgt-cttccattccattggatacacctcaaa 182  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||  || ||||||||| |||||||| ||||    
T  21263526 tggggaatgaaaagtgaggacaaaatggtaattatattattaatgtggtttcattccattcgatacaccccaaa 21263599  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 50859325 - 50859280
Alignment:
Q  137 gtaattatattattgatgtcttccattccattggatacacctcaaa 182  Q
    |||||| ||||||| |||| ||||||||||||||||||||| ||||    
T  50859325 gtaattgtattattaatgtgttccattccattggatacaccccaaa 50859280  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 5358201 - 5358246
Alignment:
Q  137 gtaattatattattgatgtcttccattccattggatacacctcaaa 182  Q
    ||||||||||||||  ||| ||||||||||||| ||||||||||||    
T  5358201 gtaattatattattattgtattccattccattgcatacacctcaaa 5358246  T

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