View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19955_low_6 (Length: 365)
Name: NF19955_low_6
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 30683685 - 30683833
Alignment:
| Q |
18 |
gttagaatattgtaattggtatttgaattatgtattttgtagcatcagtttatatatactatgtgtttaacctacactagctagagagagttaaacttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30683685 |
gttagaatattgtaattggtatttgaattatgtgttttgtagcatcagtttatatatactgtgtgtttaacctacactagctggagagagttaaacttca |
30683784 |
T |
|
| Q |
118 |
ctgctgtaactaactaaatacaaagaatatttaaactagaaaattaatc |
166 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30683785 |
ctactgtaactaactaaatgcaaagaatatttaaactagaaaattaatc |
30683833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 204 - 332
Target Start/End: Original strand, 30683871 - 30683999
Alignment:
| Q |
204 |
cttgaggaaatctgggattgatgttctgttggttatttatcatgtcggcagataatattacaatctattggagaagttgtagatcttgcgcctatgattt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30683871 |
cttgaggaaatctgggattgatgttctgttggttatttatcatgtcggcagataatattacaatctattggagaagttgtagatcttgcgcctatgattt |
30683970 |
T |
|
| Q |
304 |
catataaaggagaagctacaattggatcc |
332 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30683971 |
catataaaggagaagctacaattggatcc |
30683999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University