View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19955_low_7 (Length: 352)
Name: NF19955_low_7
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 5758708 - 5759046
Alignment:
| Q |
1 |
ccataaacattttgtttttaattccaaaatatttttgggtacccaacgacttttatctaaagatgattttcacgatcaagaaagacacgaaccataaaaa |
100 |
Q |
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| T |
5758708 |
ccataaacattttgtttttaattccaaaatatttttgggtacccaacaacttttatttaaagatgattttaacgatcaagaaagacatgaaccgtaaaaa |
5758807 |
T |
|
| Q |
101 |
tacttttatttatttatgatagtaattgtaaagatgacatttatgaaaaaggaaaatatgaaataaaaatatgacttttacaatgaagcaaaatatgagt |
200 |
Q |
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| T |
5758808 |
tacttttatttatttatgatagtaattgtaaagatgacatttatgaaaaaggaaaatatgaaataaaaatatgacttttacaatgaagcaaaatatgagt |
5758907 |
T |
|
| Q |
201 |
agtaaacattacttgtaggatatacaacttttttagtaaatcaatacgataggattaccgtaaaatatgtgtttttgtgcgatagtgtagggtactcaca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5758908 |
agtaaacattacttgtaggatatacaacttttttagtaaatcaatacgataggattaccgtaaaatatgtgtttttgtgcgatagtgtaggttactcaca |
5759007 |
T |
|
| Q |
301 |
taggtgttgagatatagataacaatttttagtacttagt |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
5759008 |
taggtgttgagatatagataacaatttttagtacttagt |
5759046 |
T |
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