View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19955_low_9 (Length: 327)
Name: NF19955_low_9
Description: NF19955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19955_low_9 |
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| [»] scaffold0856 (2 HSPs) |
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Alignment Details
Target: scaffold0856 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0856
Description:
Target: scaffold0856; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4045 - 3824
Alignment:
| Q |
1 |
atcgtttgcaggttattgtatatttttggtacagagtttgataacttgtccctctagaaaataaaaagttgtgtcaagatctaggcagaatcagaataca |
100 |
Q |
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| T |
4045 |
atcgtttgcaggttattgtatatttttggtacagagtttgataacttgtccctctagaaaataaaaagttgtgtcaagatctaggcagaatcagaataca |
3946 |
T |
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| Q |
101 |
aggcattagcagaccttgcagcacatgtatcttgaatccggtctatattataggaaataaagttgaaatacctcaaacaagtgtattgtggtgtgaaaat |
200 |
Q |
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| T |
3945 |
agacattagcagaccttgcagcacatgtagcttgaatccgatctatattataggaaataaagttgaaatacctcaaacaagtgtattgtggtgtgaaaat |
3846 |
T |
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| Q |
201 |
ttgagtgctaagcttttgcttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3845 |
ttgagtgctaagcttttgcttc |
3824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0856; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 3817 - 3756
Alignment:
| Q |
256 |
agaagtggatgtgcactatatcagagatcagttgttgagtaataacgtgactatagcctatg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3817 |
agaagtggatgtgcactatatcagagatcagttgttgagtaataacgcgactatagcctatg |
3756 |
T |
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