View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19956_high_7 (Length: 303)
Name: NF19956_high_7
Description: NF19956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19956_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 280
Target Start/End: Original strand, 47837263 - 47837539
Alignment:
| Q |
7 |
tccaagaatatgaattactacagaattattaggtcgttgagtattattgatcaaaggagagacaaaaatatgtaaataactaacgagtcaaatataatat |
106 |
Q |
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| T |
47837263 |
tccaagaacatgaattactacagaattattaggtcgttgagtattattgatcaaaggagagacaaaaatatataaataactaacgagtcaaatataatat |
47837362 |
T |
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| Q |
107 |
ataattggtcaaatctcgggttaggtatatatcagttgaatgatattgtgaaatacaccgcaatacaaaattgcctacatagatagatagatagatcacc |
206 |
Q |
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| T |
47837363 |
ataattggtcaaa--tcgggttaggtatatatcagttgaatgatattgtgaaatacaccgcaatacaaaattggctagatagatagatagatagatcacc |
47837460 |
T |
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| Q |
207 |
ccctattctatgctatagctgc-----ctgtacctggctacaaatggacatgtctaaagtaatttgatgtatattatat |
280 |
Q |
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| T |
47837461 |
ccctattctatgctatagctgcctgtactgtacctggctacaaatggacatgtctaaagtaatttgatgtatattatat |
47837539 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 303
Target Start/End: Complemental strand, 2614755 - 2614727
Alignment:
| Q |
275 |
ttatatggaaaatgttacatgaacaccct |
303 |
Q |
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| T |
2614755 |
ttatatggaaaatgttacatgaacaccct |
2614727 |
T |
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