View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19956_high_8 (Length: 292)
Name: NF19956_high_8
Description: NF19956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19956_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 35895120 - 35895275
Alignment:
| Q |
13 |
aatatcgagcgtgaactcccaccgagtactaggtagggaatgaacaattttgaaaggcagaaaaatannnnnnnnatcaagaagcttaatatcataactt |
112 |
Q |
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| T |
35895120 |
aatatcgagcgtgaactcccactaggttctgggtagggaatgaacaattttaaaaggcagaaaaataattttcttatcaagaagcttaatatcataactt |
35895219 |
T |
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| Q |
113 |
atctactcatcgccgttgtcatttgccaacgagatatgaggatcttagtatgcaat |
168 |
Q |
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| T |
35895220 |
atctactcatcgccattgtcatttgccaacgagatatgaggatcgtagtatgcaat |
35895275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 33270104 - 33270136
Alignment:
| Q |
47 |
agggaatgaacaattttgaaaggcagaaaaata |
79 |
Q |
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| T |
33270104 |
agggaatgaacaattttgaaaggaagaaaaata |
33270136 |
T |
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