View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19956_low_1 (Length: 426)

Name: NF19956_low_1
Description: NF19956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19956_low_1
NF19956_low_1
[»] chr8 (3 HSPs)
chr8 (85-257)||(38931899-38932071)
chr8 (275-408)||(38932095-38932227)
chr8 (13-88)||(38931797-38931868)


Alignment Details
Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 85 - 257
Target Start/End: Original strand, 38931899 - 38932071
Alignment:
Q  85 atatacactacaaaatataatatataactgatttgtttgcacannnnnnncactttcgtttaattataattgagctaaaaataagaaatagtgaaaaatg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38931899 atatacactacaaaatataatatataactgatttgtttgcacatttttttcactttcgtttaattataattgagctaaaaataagaaatagtgaaaaatg 38931998  T
Q  185 gaaaaccaagaaaatcctatgaagctgttgatcatttcattgtctatattaattgattcacactacaaaagcc 257  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38931999 gaaaaccaagaaaattctatgaagctgttgatcttttcattgtctatattaattgattcacactacaaaagcc 38932071  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 275 - 408
Target Start/End: Original strand, 38932095 - 38932227
Alignment:
Q  275 aactagagactaaaaacaaccatttaattcctcctttcaagtnnnnnnnggagaaattaattaatccagctaaaatatcaaacccacttcgcattacatc 374  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38932095 aactagagactaaaaacaaccatttaattcctcctttcaagtaaaaaa-ggagaaattaattaatccagctaaaatatcaaacccacttctcattacatc 38932193  T
Q  375 ctctgatgaaaaataacatcatcaaacataaaaa 408  Q
    ||||||||||||||||||||||||||||||||||    
T  38932194 ctctgatgaaaaataacatcatcaaacataaaaa 38932227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 38931797 - 38931868
Alignment:
Q  13 aatattagtagttactagtgatctatcgattcataagtagatagtaaccttaaaactctaatcaacatttaaatat 88  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38931797 aatattagtagttactagtgatc----gattcataagtagatagtaaccttaaaactctaatcaacatttaaatat 38931868  T

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