View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19956_low_13 (Length: 267)
Name: NF19956_low_13
Description: NF19956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19956_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 85 - 249
Target Start/End: Original strand, 5876661 - 5876825
Alignment:
| Q |
85 |
aagtcataatcatatcccatttcgtccattgcctatattggtgtatgctaatatgtcttccaacactcacttttgagattaaacgacaaagaaagggagc |
184 |
Q |
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| T |
5876661 |
aagtcataatcatatcccatttcgtccattgcctatattgttgtatgctaatatgtcttccaacactcacttttgagatgaaacgacaaagaaagggagc |
5876760 |
T |
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| Q |
185 |
tgagtgacataacaaataaatggcaaagtttagatttcatgatttcctctttggaaaggttcctt |
249 |
Q |
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| T |
5876761 |
tgagtgacataacaaataaatggcaaagtttagatttcatgatttcctctttggaaaggttcctt |
5876825 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 5876555 - 5876624
Alignment:
| Q |
4 |
gtagaatcataggtgataaatgatacaacgtagccgtttcttccacccaataatcataatcattttttat |
73 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5876555 |
gtagaatgataggtgatagatgatacaacgtagccgtttcttccacccaataatcataatcattttttat |
5876624 |
T |
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