View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19956_low_2 (Length: 421)
Name: NF19956_low_2
Description: NF19956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19956_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 54119282 - 54118941
Alignment:
| Q |
13 |
aatatcaacaataatggtccagtagctcttctggatctgaatctaccagcggaagagtcgatcaatgtggcctcttttcaatggttggcaagatcagctc |
112 |
Q |
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| T |
54119282 |
aatatcaacaataatggtccaatagctcttccggatctgaatctaccagtggaagagtcgatcaatgtggcctcttttcaatggttggcaagatcagctc |
54119183 |
T |
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| Q |
113 |
aacacattaggaggtgtgatgtgaattcgactcggaaacttatttaaaccttataatagtacttaagtaaaattatcaactttagatttaaatgttattt |
212 |
Q |
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| T |
54119182 |
aacacattaggaggtgtgatgtgaattcgactcggaaacttatttaaaccttataatagtactcaagtaaaattatcaactttagatttaaatgttattt |
54119083 |
T |
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| Q |
213 |
ttcctatgttttagaatgtaaaattattatgtaatggatttcgtttggtatttatttttaaattgatgattagaattagcaaaaatagtaaactggttta |
312 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54119082 |
ttcctatgttttagaaagtaaaattattatgtaatggatttcgtttggtatttatttttaaattgatgattagaattagcaaaaatagtaaactgattta |
54118983 |
T |
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| Q |
313 |
attatgttgagacataagagtaaagatggtaaaaggtatgct |
354 |
Q |
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| T |
54118982 |
attatgttgagacataagagtaaagatggtaaaaggtatgct |
54118941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 372 - 403
Target Start/End: Complemental strand, 54118941 - 54118910
Alignment:
| Q |
372 |
tagcttgagtccatttctaaccaggagcaggc |
403 |
Q |
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| T |
54118941 |
tagcttgagtccatttctaaccaggagcaggc |
54118910 |
T |
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