View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19956_low_4 (Length: 386)
Name: NF19956_low_4
Description: NF19956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19956_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 4774517 - 4774883
Alignment:
| Q |
12 |
tttatgataataaattaatgcgtgtaagcgtgtgaaattatgtgattagtgttggcatatacgaatatgctgagaatcgtgagatcataagatgaatgag |
111 |
Q |
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| T |
4774517 |
tttatgataataaattaatgcgtgtaagcgtgtgaaattatgtgattagtgttggcatatacgaatatgctgagaatcgtgagatcataagatgaatgag |
4774616 |
T |
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| Q |
112 |
acatgtaagtcacgtaaaaaatatttcagtgcaaatatataaagtgattcctctattttatttaacatattttcatagcatgtacgtgacagattgaagc |
211 |
Q |
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| T |
4774617 |
acatgtaagtcacgtaaaaaatatttcagtgtaaatatataaagtgattcctctattttatttaacatatttttatagcatgtacgtgacagattgaagc |
4774716 |
T |
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| Q |
212 |
tggggaaggttgcaacggcaagtattctccaatggtcccaacaga--nnnnnnnnnnatagaaactaactaattatctttacaatatctaaggatttgta |
309 |
Q |
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| T |
4774717 |
tggggaaggttgcaacggcaagtattttccaatggtcccaacagattttttttttttatagaaactaagtaattatctttacaatatctaaggatttgta |
4774816 |
T |
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| Q |
310 |
gagagaaatgcatgatctcttataaactttttcttactgcacttcattgtgtcgaatattcttggac |
376 |
Q |
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| T |
4774817 |
gagagaaattcatgatctcttataaactttttcttactgcacttcattgtgtcgaatattattggac |
4774883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 112 - 244
Target Start/End: Complemental strand, 23169187 - 23169055
Alignment:
| Q |
112 |
acatgtaagtcacgtaaaaaatatttcagtgcaaatatataaagtgattcctctattttatttaacatattttcatagcatgtacgtgacagattgaagc |
211 |
Q |
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||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23169187 |
acatgtaagtcacataacaaatatttcactacaaatatataaagtgattcctctattttatttaatatattttcatagcatgtacgtgacagattgaagc |
23169088 |
T |
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| Q |
212 |
tggggaaggttgcaacggcaagtattctccaat |
244 |
Q |
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| T |
23169087 |
tggggaaggttgcaacgacaagtaatctccaat |
23169055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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