View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19956_low_7 (Length: 324)

Name: NF19956_low_7
Description: NF19956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19956_low_7
NF19956_low_7
[»] chr1 (9 HSPs)
chr1 (1-310)||(30710276-30710585)
chr1 (95-310)||(30689601-30689816)
chr1 (95-309)||(30718644-30718858)
chr1 (82-310)||(30698474-30698702)
chr1 (95-303)||(30656545-30656753)
chr1 (96-309)||(30671707-30671920)
chr1 (207-286)||(16252065-16252144)
chr1 (207-285)||(33042601-33042679)
chr1 (275-310)||(15815181-15815216)
[»] chr4 (1 HSPs)
chr4 (123-303)||(56539165-56539345)
[»] chr2 (1 HSPs)
chr2 (231-275)||(38337630-38337674)


Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 30710276 - 30710585
Alignment:
Q  1 caccaacacacttgatgatccctctgctgattcttgaaatttccctgctttaccctttttactttttgacgatgaccttaattttctttggttgtagtgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30710276 caccaacacacttgatgatccctctgctgattcttgaaatttccctgctttaccctttttactttttgacgatgaccttaattttctttggttgtagtgt 30710375  T
Q  101 ctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcgaaagaaaaattgaggaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30710376 ctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctcttgcaaagattctttgacgctttcgaaagaaaaattgaggaaag 30710475  T
Q  201 cattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaacccttcttcctcctcttgt 300  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30710476 cattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttcttcctcctcttgt 30710575  T
Q  301 tgtatctctg 310  Q
    ||||||||||    
T  30710576 tgtatctctg 30710585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 95 - 310
Target Start/End: Original strand, 30689601 - 30689816
Alignment:
Q  95 tagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcgaaagaaaaattga 194  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||  | |||||||||||    
T  30689601 tagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattga 30689700  T
Q  195 ggaaagcattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaacccttcttcctcc 294  Q
    | | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  30689701 gcacagcatcataacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcc 30689800  T
Q  295 tcttgttgtatctctg 310  Q
    ||||||||| ||||||    
T  30689801 tcttgttgtgtctctg 30689816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 95 - 309
Target Start/End: Original strand, 30718644 - 30718858
Alignment:
Q  95 tagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcgaaagaaaaattga 194  Q
    ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||| ||||  | |||||||||||    
T  30718644 tagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatcgcttgcaaagattctttgaccctttgaacagaaaaattga 30718743  T
Q  195 ggaaagcattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaacccttcttcctcc 294  Q
    | | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  30718744 gcacagcatcataacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcc 30718843  T
Q  295 tcttgttgtatctct 309  Q
    |||||||||||||||    
T  30718844 tcttgttgtatctct 30718858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 82 - 310
Target Start/End: Original strand, 30698474 - 30698702
Alignment:
Q  82 ttttctttggttgtagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcg 181  Q
    ||||||||| |  ||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||      
T  30698474 ttttctttgttcatagtgcctttcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccctttga 30698573  T
Q  182 aaagaaaaattgaggaaagcattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaa 281  Q
    | |||||||||||| | |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30698574 acagaaaaattgagcacagcattattacctctcattgagaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaa 30698673  T
Q  282 cccttcttcctcctcttgttgtatctctg 310  Q
    | |||||||||||||||||||||||||||    
T  30698674 ctcttcttcctcctcttgttgtatctctg 30698702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 95 - 303
Target Start/End: Original strand, 30656545 - 30656753
Alignment:
Q  95 tagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcgaaagaaaaattga 194  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||  | |||||||||||    
T  30656545 tagtgcctctcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattga 30656644  T
Q  195 ggaaagcattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaacccttcttcctcc 294  Q
    | | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | || ||    
T  30656645 gcacagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctaaccaaacccttttgccacc 30656744  T
Q  295 tcttgttgt 303  Q
     ||||||||    
T  30656745 ccttgttgt 30656753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 96 - 309
Target Start/End: Original strand, 30671707 - 30671920
Alignment:
Q  96 agtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcgaaagaaaaattgag 195  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||  | ||||||||||||    
T  30671707 agtgtctctccttgagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgag 30671806  T
Q  196 gaaagcattataacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaacccttcttcctcct 295  Q
     |  ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| | || ||     
T  30671807 cacggcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaacccttttaccaccc 30671906  T
Q  296 cttgttgtatctct 309  Q
    |||||||| |||||    
T  30671907 cttgttgtgtctct 30671920  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 16252065 - 16252144
Alignment:
Q  207 aacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaaccctt 286  Q
    ||||||||||| |||| |||||||||||||||||||  || ||  |||||||||||| ||||||||||| ||| ||||||    
T  16252065 aacctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccataccctt 16252144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 285
Target Start/End: Complemental strand, 33042679 - 33042601
Alignment:
Q  207 aacctctcattaaaaatgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaaccct 285  Q
    ||||||||||  |||| || |||||||||||||| ||||||||| |||| ||||||| ||| ||||||||||| |||||    
T  33042679 aacctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccct 33042601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 310
Target Start/End: Complemental strand, 15815216 - 15815181
Alignment:
Q  275 agccaaacccttcttcctcctcttgttgtatctctg 310  Q
    ||||||||||||||||||||||||| ||||||||||    
T  15815216 agccaaacccttcttcctcctcttgctgtatctctg 15815181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 123 - 303
Target Start/End: Complemental strand, 56539345 - 56539165
Alignment:
Q  123 gtgaagacccttttctgcaatcatattgaatctctcgcaaagattctttgacgctttcgaaagaaaaattgaggaaagcattataacctctcattaaaaa 222  Q
    ||||| || ||| |||||||||||||||||||||| ||||| || ||||||| ||||  | |||||||||||| | | |||||| |||||||| | ||||    
T  56539345 gtgaaaactcttctctgcaatcatattgaatctcttgcaaatatcctttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaa 56539246  T
Q  223 tgcagcttgatcataagctaaagcagcatcttcagcactattaaatgttcctagccaaacccttcttcctcctcttgttgt 303  Q
    |||||||||||| ||||||||||||||||| |||||||| | ||||||||| |||||||| |||||||||  |||||||||    
T  56539245 tgcagcttgatcgtaagctaaagcagcatcctcagcactgtcaaatgttccaagccaaacacttcttccttttcttgttgt 56539165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 38337674 - 38337630
Alignment:
Q  231 gatcataagctaaagcagcatcttcagcactattaaatgttccta 275  Q
    ||||||| ||||||||||||||||| ||| ||| |||||||||||    
T  38337674 gatcataggctaaagcagcatcttctgcagtatcaaatgttccta 38337630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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