View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19956_low_9 (Length: 313)
Name: NF19956_low_9
Description: NF19956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19956_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 30710013 - 30710303
Alignment:
| Q |
15 |
tcagtatttgaatggagaaattgtcagagatgacaatttagacctagtgaattaacaggnnnnnnntgcagctagaatttcaaagtagcaagcatatttg |
114 |
Q |
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| T |
30710013 |
tcagtatttgaatggagaaattgtcagagatgacaatttagacctagtgaattaacaggaaaaaaatgcagctagaatttcaaagtagcaagcatatttg |
30710112 |
T |
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| Q |
115 |
caatatgccctagctgaataattaatgtcgtaaaaattgcaacnnnnnnnnncagaaagaaaattacaaacaaagttaattattagaagttggttaagct |
214 |
Q |
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| T |
30710113 |
caatatgccctagctgaataattaatgtcgtaaaaattccaacaacaaaaaacagaaagaaaattacaaacaaagttaattattagaagttggttaagct |
30710212 |
T |
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| Q |
215 |
tgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgatgatccctatgct |
305 |
Q |
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| T |
30710213 |
tgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgatgatccctctgct |
30710303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 30671555 - 30671636
Alignment:
| Q |
212 |
gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat |
293 |
Q |
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| T |
30671555 |
gcttgtactttgatgatctgacatagttaaaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgat |
30671636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 30656394 - 30656475
Alignment:
| Q |
212 |
gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat |
293 |
Q |
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| T |
30656394 |
gcttgtagtttgattatcagatatggttagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgat |
30656475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 30689453 - 30689534
Alignment:
| Q |
212 |
gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat |
293 |
Q |
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| T |
30689453 |
gcttgtactttgattatcagatatggatagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgat |
30689534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 30698336 - 30698417
Alignment:
| Q |
212 |
gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat |
293 |
Q |
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||||| |||||||||||| || || ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30698336 |
gcttgaactttgattatcagatattgttagaagttgctcgagatattcaactcccaaatcctctaacaccaaaacacttgat |
30698417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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