View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19957_high_12 (Length: 321)
Name: NF19957_high_12
Description: NF19957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19957_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 36052720 - 36053027
Alignment:
| Q |
1 |
catgatttgaacctccttttgatttatgctatacattgtcggagcgaattttgttacccaaggttatttgattcaacaaaagggacaggggaggttgttg |
100 |
Q |
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| T |
36052720 |
catgatttgaacctccttttgatttatgctatacattgtcggagcgaattttgttacccaaggttatttgattcaacaaaagggacaggggaggttgttg |
36052819 |
T |
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| Q |
101 |
attggggcataaacatattttgcttaatggttgcagctccattttgttccttactatccttacataatctgcatcacattgatgatattttctcttacaa |
200 |
Q |
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| T |
36052820 |
attggggcataaacatattttgcttaatggttgcagctccattttgttccttactatccttacataatccgcatcacattgatgatattttctcttacaa |
36052919 |
T |
|
| Q |
201 |
gacaacttcaaattccaagcaacatttatctaacaaggtagagtttgattcagttgttgcagtcatggaggtgatgctttataagggaaaattccttaat |
300 |
Q |
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| T |
36052920 |
gacaacttcaaattccaagcaacatttatctaacaaggtagagtttgattcagttgttgcagtcatggaggtgatgctttataagggaaaattccttaat |
36053019 |
T |
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| Q |
301 |
attttgat |
308 |
Q |
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|||||||| |
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| T |
36053020 |
attttgat |
36053027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 6072445 - 6072595
Alignment:
| Q |
1 |
catgatttgaacctccttttgatttatgctatacattgtcggagcgaattttgttacccaaggttatttgattcaacaaaagggacaggggaggttgttg |
100 |
Q |
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|||||||||||||| |||||| |||||| || ||||||| ||||| ||||||||||||||||||| |||||||| |||||| || |||||||||||||| |
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| T |
6072445 |
catgatttgaacctacttttgctttatgttacacattgtgggagcaaattttgttacccaaggttgtttgattcgacaaaactgataggggaggttgttg |
6072544 |
T |
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| Q |
101 |
attggggcataaacatattttgcttaatggttgcagctccattttgttcct |
151 |
Q |
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| T |
6072545 |
attggggcataaacatattttgcttaatagttgcagctccatattgttcct |
6072595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 13924132 - 13924217
Alignment:
| Q |
18 |
tttgatttatgctatacattgtcggagcgaattttgttacccaaggttatttgattcaacaaaagggacaggggaggttgttgatt |
103 |
Q |
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|||||| ||||||| | |||| ||||| ||||||||||||||||||| ||||||||||||||| | |||| |||||||||||| |
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| T |
13924132 |
tttgatatatgctacattttgtgggagcaaattttgttacccaaggttgcttgattcaacaaaagcaatagggaaggttgttgatt |
13924217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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