View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19957_high_6 (Length: 487)
Name: NF19957_high_6
Description: NF19957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19957_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 36052234 - 36052598
Alignment:
| Q |
18 |
actatcaccacactgtttgggatnnnnnnncttctagaggcacttatcattatgtttaagttgggtgaagctagtgcagtgtataaactttctcagacag |
117 |
Q |
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| T |
36052234 |
actatcaccacactgtttgggataaaaaaacttctagaggcacttatcattatgtttaagttgggtgaagctagtgcagtgtataaactttctcagacag |
36052333 |
T |
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| Q |
118 |
gtttgatcacaattactgattatattaatgtcattgttctgctgattgtttgttcaacatatgtgtcgcaccataaagctattgaactaccatcacaact |
217 |
Q |
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| T |
36052334 |
gtttgatcacaattactgattatattaatgtcattgttctgctgattgtttgttcaacatatgtgtcgcaccataaagctattgaactaccatcacaact |
36052433 |
T |
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| Q |
218 |
ttgccatgatcagcctgacatgttaagggccactattgcaatgatatcttcatgtatctcttcaattgctattctaatgtgtagtaatgataaggcaaac |
317 |
Q |
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| T |
36052434 |
atgccatgatcagcctgacatgttaagggccactattgcaatgatatcttcatgtatctcttcaattgctattctaatgtgtagtaatgataaggcaaac |
36052533 |
T |
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| Q |
318 |
caattatttttggaaaattctagcgtggaaggtagactcctttctctacttggctatgtatttaa |
382 |
Q |
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| T |
36052534 |
caattatttttggaaaattctagcgtggaaggtagactcctttctctacttggctatgtatttaa |
36052598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 385 - 472
Target Start/End: Original strand, 36052628 - 36052715
Alignment:
| Q |
385 |
ataggttctcaacatttgtaaatgtccttatgcatgctgatgggttctttggaatttgtgggtctgttcccttgtattgggatgatgt |
472 |
Q |
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| T |
36052628 |
ataggttctcaacatttgtaaatgtccttatgcatgctgatgggttctttggaatttgtgggtctgttcccttgtattgggatgatgt |
36052715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 472
Target Start/End: Original strand, 6072371 - 6072440
Alignment:
| Q |
403 |
taaatgtccttatgcatgctgatgggttctttggaatttgtgggtctgttcccttgtattgggatgatgt |
472 |
Q |
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||||||||| || ||||||||||| |||||||||||||||||||| ||||| ||| ||||| ||||||| |
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| T |
6072371 |
taaatgtccataagcatgctgatgagttctttggaatttgtgggtttgttcacttctattgcaatgatgt |
6072440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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