View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19957_low_11 (Length: 351)

Name: NF19957_low_11
Description: NF19957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19957_low_11
NF19957_low_11
[»] chr6 (8 HSPs)
chr6 (20-334)||(4573003-4573318)
chr6 (163-334)||(4566133-4566304)
chr6 (146-283)||(4559223-4559360)
chr6 (30-107)||(4587611-4587688)
chr6 (267-333)||(4559376-4559445)
chr6 (22-107)||(4566029-4566114)
chr6 (197-267)||(4615168-4615237)
chr6 (140-172)||(4587717-4587749)
[»] chr8 (2 HSPs)
chr8 (197-283)||(16684947-16685033)
chr8 (267-333)||(16684862-16684928)
[»] chr7 (1 HSPs)
chr7 (152-197)||(1481875-1481920)
[»] chr2 (1 HSPs)
chr2 (146-218)||(31677362-31677435)
[»] chr4 (2 HSPs)
chr4 (163-215)||(30551590-30551642)
chr4 (150-218)||(37214216-37214284)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 4573003 - 4573318
Alignment:
Q  20 catcgtttgggatttattttggaattgatagaataataaagttgagaaacactgtatattgtgatccaaagatcactaatataaccaaccttgcatctaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4573003 catcgtttgggatttattttggaattgatagaataataaagttgagaaacactgtatattgtgatcctaagatcactaatataaccaaccttgcatctaa 4573102  T
Q  120 tcataactaacnnnnnnn-ataagcaataatcataactaacttataactatcttaaacaatactaaactaatttcaacaaatctgaaactatatctaaca 218  Q
    |||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4573103 tcataactaacttttttttataagcaataatcataactaacttataactatcttaaacaatactaaactaatttcaacaaatatgaaactatatctaaca 4573202  T
Q  219 catacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgcttgtggaccaactccatacgtttcagtttcaaaattg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4573203 catacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgcttgtggaccaactctatacgtttcagtttcaaaattg 4573302  T
Q  319 aactagaagacacttc 334  Q
    ||||||||||||||||    
T  4573303 aactagaagacacttc 4573318  T

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Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 163 - 334
Target Start/End: Original strand, 4566133 - 4566304
Alignment:
Q  163 taactatcttaaacaatactaaactaatttcaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatc 262  Q
    ||||||||||  | |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4566133 taactatcttccaaaatattaaactaattttaacaaatctgaaactacatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatc 4566232  T
Q  263 aaacaaaatcttcatatgcttgtggaccaactccatacgtttcagtttcaaaattgaactagaagacacttc 334  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  4566233 aaacaaaatcttcatatgcttgtggaccaactctatacgtttcagtttcaaaattgaactagaaggcacttc 4566304  T

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Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 146 - 283
Target Start/End: Original strand, 4559223 - 4559360
Alignment:
Q  146 taatcataactaacttataactatcttaaacaatactaaactaatttcaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattc 245  Q
    ||||||||||||||||||||||||||| || ||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4559223 taatcataactaacttataactatcttgaaaaatatcaaactaattttaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattc 4559322  T
Q  246 agtagaaagatattatcaaacaaaatcttcatatgctt 283  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4559323 agtagaaagatattatcaaacaaaatcttcatatgctt 4559360  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 4587611 - 4587688
Alignment:
Q  30 gatttattttggaattgatagaataataaagttgagaaacactgtatattgtgatccaaagatcactaatataaccaa 107  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  4587611 gatttattttggaattgatagaataaaaaagttgagaaacactttatattgtgatcctaagattactaatataaccaa 4587688  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 4559376 - 4559445
Alignment:
Q  267 aaaatcttcatatgcttgtggaccaact---ccatacgtttcagtttcaaaattgaactagaagacactt 333  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| |||||||    
T  4559376 aaaatcttcatatgcttgtggaccaactgatccatacgtttcagtttcaaaattgaactagatgacactt 4559445  T

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Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 4566029 - 4566114
Alignment:
Q  22 tcgtttgggatttattttggaattgatagaataataaagttgagaaacactgtatattgtgatccaaagatcactaatataaccaa 107  Q
    ||||||| ||||||||| |||||||||| ||||  |||||||||||| ||| ||||||||||||| || |||||||||||||||||    
T  4566029 tcgtttgagatttatttgggaattgataaaatagaaaagttgagaaaaactttatattgtgatcctaaaatcactaatataaccaa 4566114  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 4615168 - 4615237
Alignment:
Q  197 aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaaca 267  Q
    |||||| ||||||||||||| | |||| ||||||| ||| |||||||||||| | ||||||| ||||||||    
T  4615168 aaatctcaaactatatctaaaaaatacatgcatggcattccaaccattcagt-ggaagatatcatcaaaca 4615237  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 4587717 - 4587749
Alignment:
Q  140 aagcaataatcataactaacttataactatctt 172  Q
    |||||||||||||||||||||||||| ||||||    
T  4587717 aagcaataatcataactaacttataaatatctt 4587749  T

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Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 16685033 - 16684947
Alignment:
Q  197 aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgctt 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16685033 aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgctt 16684947  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 267 - 333
Target Start/End: Complemental strand, 16684928 - 16684862
Alignment:
Q  267 aaaatcttcatatgcttgtggaccaactccatacgtttcagtttcaaaattgaactagaagacactt 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  16684928 aaaatcttcatatgcttgtggaccaactccatacgtttcagtttcctaattgaactagaagacactt 16684862  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 1481920 - 1481875
Alignment:
Q  152 taactaacttataactatcttaaacaatactaaactaatttcaaca 197  Q
    |||||||||| |||||||||||||||||| | ||||||||| ||||    
T  1481920 taactaacttgtaactatcttaaacaatattcaactaattttaaca 1481875  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 31677362 - 31677435
Alignment:
Q  146 taatcataactaacttataactatcttaaacaata-ctaaactaatttcaacaaatctgaaactatatctaaca 218  Q
    ||||||||||||| |||||||||| ||||| ||||  | ||||||||  ||||||||| ||||||| |||||||    
T  31677362 taatcataactaatttataactattttaaataatattttaactaattataacaaatctcaaactatctctaaca 31677435  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 30551590 - 30551642
Alignment:
Q  163 taactatcttaaacaatactaaactaatttcaacaaatctgaaactatatcta 215  Q
    |||||| ||||||||||| | || |||||| ||||||||| ||||||||||||    
T  30551590 taactaccttaaacaatattcaaataattttaacaaatctcaaactatatcta 30551642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 37214284 - 37214216
Alignment:
Q  150 cataactaacttataactatcttaaacaatactaaactaatttcaacaaatctgaaactatatctaaca 218  Q
    |||||||||||| |||||| |||||||||||   ||||||||  ||||||| | ||||||| |||||||    
T  37214284 cataactaacttttaactaccttaaacaatatccaactaattctaacaaatatcaaactatctctaaca 37214216  T

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