View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19957_low_12 (Length: 337)

Name: NF19957_low_12
Description: NF19957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19957_low_12
NF19957_low_12
[»] chr6 (12 HSPs)
chr6 (1-306)||(713397-713702)
chr6 (209-306)||(710239-710335)
chr6 (304-337)||(13853691-13853724)
chr6 (301-337)||(8099526-8099562)
chr6 (297-337)||(11572243-11572283)
chr6 (303-337)||(2830333-2830367)
chr6 (304-337)||(8383067-8383100)
chr6 (304-337)||(33052892-33052925)
chr6 (305-337)||(6330115-6330147)
chr6 (305-337)||(9644696-9644728)
chr6 (305-337)||(9650713-9650745)
chr6 (305-337)||(26602323-26602355)
[»] chr3 (13 HSPs)
chr3 (304-337)||(8817484-8817517)
chr3 (304-337)||(9111592-9111625)
chr3 (298-337)||(22721924-22721963)
chr3 (303-337)||(19557150-19557184)
chr3 (303-337)||(49823479-49823513)
chr3 (304-337)||(4238593-4238626)
chr3 (304-337)||(8437424-8437457)
chr3 (304-337)||(21295424-21295457)
chr3 (304-337)||(34080128-34080161)
chr3 (304-337)||(38964391-38964424)
chr3 (304-337)||(44785494-44785527)
chr3 (305-337)||(10297979-10298011)
chr3 (305-337)||(35513473-35513505)
[»] chr2 (12 HSPs)
chr2 (296-337)||(15896833-15896874)
chr2 (298-337)||(3055551-3055590)
chr2 (303-337)||(4684030-4684064)
chr2 (304-337)||(37990111-37990144)
chr2 (304-337)||(41478737-41478770)
chr2 (304-337)||(44397546-44397579)
chr2 (304-337)||(44398685-44398718)
chr2 (305-337)||(6648617-6648649)
chr2 (305-337)||(13197808-13197840)
chr2 (305-337)||(16044415-16044447)
chr2 (305-337)||(37666708-37666740)
chr2 (298-334)||(40430658-40430694)
[»] chr8 (17 HSPs)
chr8 (301-337)||(43199452-43199488)
chr8 (304-337)||(54710-54743)
chr8 (304-337)||(2890260-2890293)
chr8 (304-337)||(4245679-4245712)
chr8 (304-337)||(7785876-7785909)
chr8 (304-337)||(7805797-7805830)
chr8 (304-337)||(27422288-27422321)
chr8 (304-337)||(32211461-32211494)
chr8 (304-337)||(33289359-33289392)
chr8 (305-337)||(3304376-3304408)
chr8 (305-337)||(6552655-6552687)
chr8 (305-337)||(7012171-7012203)
chr8 (305-337)||(12343238-12343270)
chr8 (305-337)||(15888450-15888482)
chr8 (305-337)||(32114573-32114605)
chr8 (305-337)||(39571301-39571333)
chr8 (305-337)||(44498285-44498317)
[»] chr7 (11 HSPs)
chr7 (301-337)||(7482221-7482257)
chr7 (303-337)||(38064011-38064045)
chr7 (304-337)||(1565827-1565860)
chr7 (304-337)||(1738545-1738578)
chr7 (304-337)||(7240748-7240781)
chr7 (304-337)||(28536849-28536882)
chr7 (304-337)||(46840859-46840892)
chr7 (305-337)||(23314237-23314269)
chr7 (305-337)||(31319497-31319529)
chr7 (305-337)||(36583395-36583427)
chr7 (305-337)||(38441460-38441492)
[»] scaffold0204 (1 HSPs)
scaffold0204 (298-337)||(23778-23817)
[»] chr4 (11 HSPs)
chr4 (298-337)||(7579303-7579342)
chr4 (298-337)||(48336256-48336295)
chr4 (303-337)||(26231575-26231609)
chr4 (303-337)||(33551199-33551233)
chr4 (304-337)||(3372120-3372153)
chr4 (304-337)||(3992975-3993008)
chr4 (304-337)||(47833610-47833643)
chr4 (305-337)||(6121991-6122023)
chr4 (305-337)||(20538784-20538816)
chr4 (305-337)||(24704370-24704402)
chr4 (305-337)||(53337370-53337402)
[»] chr1 (13 HSPs)
chr1 (303-337)||(9981645-9981679)
chr1 (303-337)||(34042694-34042728)
chr1 (304-337)||(11795932-11795965)
chr1 (304-337)||(12483726-12483759)
chr1 (304-337)||(26471163-26471196)
chr1 (304-337)||(27159456-27159489)
chr1 (304-337)||(44668191-44668224)
chr1 (305-337)||(1050888-1050920)
chr1 (305-337)||(23278099-23278131)
chr1 (305-337)||(31842893-31842925)
chr1 (305-337)||(39402064-39402096)
chr1 (305-337)||(47216797-47216829)
chr1 (301-337)||(47678372-47678408)
[»] scaffold0482 (1 HSPs)
scaffold0482 (304-337)||(12859-12892)
[»] scaffold0009 (1 HSPs)
scaffold0009 (304-337)||(49504-49537)
[»] chr5 (8 HSPs)
chr5 (304-337)||(582988-583021)
chr5 (304-337)||(4443959-4443992)
chr5 (304-337)||(17025623-17025656)
chr5 (304-337)||(20848073-20848106)
chr5 (304-337)||(37149053-37149086)
chr5 (304-337)||(37641952-37641985)
chr5 (302-330)||(1248954-1248982)
chr5 (305-337)||(9395350-9395382)
[»] scaffold0464 (1 HSPs)
scaffold0464 (305-337)||(6229-6261)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 713702 - 713397
Alignment:
Q  1 atgtttcttcctcaaaccccaattttcattttgtatttataatgttagcaatttcacaccagcaatacaagtataaaaacgcaataagtttaagtaaact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  713702 atgtttcttcctcaaaccccaattttcattttgtatttataatgttagcaatttcacaccagcaatacaagtataaaaacgcaataagtttaagtaaatt 713603  T
Q  101 acactatttaattgatcaaatatccaaaatacctctaatgttataataaattttcaaaatagtcatatataaattcaaatttcctacgatcatcaattgt 200  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  713602 acactatttaattgataaaatatccaaaatacctctaatattataataaattttcaaaatagtcatatatgaattcaaatttcctacgatcatcaattgt 713503  T
Q  201 acacattcactccttatcaactaagttgcattttcaaagagctatagtgagaaattcttccctatcaaaagtaagttacaaatgctactatacaatatat 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  713502 acacattcactccttatcaactaagttccattttcaaagagctatagtgagaaattcttccgtatcaaaagtaagttacaaatgctactatacaatatat 713403  T
Q  301 attata 306  Q
    ||||||    
T  713402 attata 713397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 306
Target Start/End: Original strand, 710239 - 710335
Alignment:
Q  209 actccttatcaactaagttgcattttcaaagagctatagtgagaaattcttcc-ctatcaaaagtaagttacaaatgctactatacaatatatattata 306  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||||||||||  ||||  ||||| ||| ||||||||||||| ||||  ||||||||    
T  710239 actccttatcaaataagttgaattttcaaggagctatagtgagaaattcttcctttatc--aagtatgttgcaaatgctactattcaattcatattata 710335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 13853724 - 13853691
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||||||||||||||||||||||||||||    
T  13853724 atactaccttcggtcctatttataagagaaattt 13853691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 8099526 - 8099562
Alignment:
Q  301 attatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||||| ||||||||||||||||||||||||    
T  8099526 attatactacctccggtcctatttataagagaaattt 8099562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 11572283 - 11572243
Alignment:
Q  297 atatattatactaccttcggtcctatttataagagaaattt 337  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  11572283 atatcttatactacctccggtcctatttataagagaaattt 11572243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 2830333 - 2830367
Alignment:
Q  303 tatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||| ||||||||||||||||||||||||    
T  2830333 tatactacctccggtcctatttataagagaaattt 2830367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 8383100 - 8383067
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  8383100 atactacctccggtcctatttataagagaaattt 8383067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 33052925 - 33052892
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  33052925 atactacctccggtcctatttataagagaaattt 33052892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 6330115 - 6330147
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  6330115 tactacctccggtcctatttataagagaaattt 6330147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 9644696 - 9644728
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  9644696 tactacctccggtcctatttataagagaaattt 9644728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 9650713 - 9650745
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  9650713 tactacctccggtcctatttataagagaaattt 9650745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 26602323 - 26602355
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  26602323 tactacctccggtcctatttataagagaaattt 26602355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 8817517 - 8817484
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||||||||||||||||||||||||||||    
T  8817517 atactaccttcggtcctatttataagagaaattt 8817484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 9111625 - 9111592
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||||||||||||||||||||||||||||    
T  9111625 atactaccttcggtcctatttataagagaaattt 9111592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 22721924 - 22721963
Alignment:
Q  298 tatattatactaccttcggtcctatttataagagaaattt 337  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  22721924 tatataatactacctccggtcctatttataagagaaattt 22721963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 19557184 - 19557150
Alignment:
Q  303 tatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||| ||||||||||||||||||||||||    
T  19557184 tatactacctccggtcctatttataagagaaattt 19557150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 49823513 - 49823479
Alignment:
Q  303 tatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||| ||||||||||||||||||||||||    
T  49823513 tatactacctccggtcctatttataagagaaattt 49823479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 4238593 - 4238626
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  4238593 atactacctccggtcctatttataagagaaattt 4238626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 8437424 - 8437457
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  8437424 atactacctccggtcctatttataagagaaattt 8437457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 21295457 - 21295424
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  21295457 atactacctccggtcctatttataagagaaattt 21295424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 34080161 - 34080128
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  34080161 atactacctccggtcctatttataagagaaattt 34080128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 38964391 - 38964424
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  38964391 atactacctccggtcctatttataagagaaattt 38964424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 44785527 - 44785494
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  44785527 atactacctccggtcctatttataagagaaattt 44785494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 10297979 - 10298011
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  10297979 tactacctccggtcctatttataagagaaattt 10298011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 35513473 - 35513505
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||| ||||||||||||||||||||||||||||    
T  35513473 tactcccttcggtcctatttataagagaaattt 35513505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 337
Target Start/End: Original strand, 15896833 - 15896874
Alignment:
Q  296 tatatattatactaccttcggtcctatttataagagaaattt 337  Q
    |||| |||||||||||| ||||||||||||||||||||||||    
T  15896833 tataaattatactacctccggtcctatttataagagaaattt 15896874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 3055551 - 3055590
Alignment:
Q  298 tatattatactaccttcggtcctatttataagagaaattt 337  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  3055551 tatactatactacctccggtcctatttataagagaaattt 3055590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 4684064 - 4684030
Alignment:
Q  303 tatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||| ||||||||||||||||||||||||    
T  4684064 tatactacctccggtcctatttataagagaaattt 4684030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 37990144 - 37990111
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  37990144 atactacctccggtcctatttataagagaaattt 37990111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 41478770 - 41478737
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  41478770 atactacctccggtcctatttataagagaaattt 41478737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 44397546 - 44397579
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  44397546 atactacctccggtcctatttataagagaaattt 44397579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 44398685 - 44398718
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  44398685 atactacctccggtcctatttataagagaaattt 44398718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 6648649 - 6648617
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  6648649 tactacctccggtcctatttataagagaaattt 6648617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 13197840 - 13197808
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  13197840 tactacctccggtcctatttataagagaaattt 13197808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 16044447 - 16044415
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  16044447 tactacctccggtcctatttataagagaaattt 16044415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 37666740 - 37666708
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  37666740 tactacctccggtcctatttataagagaaattt 37666708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 40430658 - 40430694
Alignment:
Q  298 tatattatactaccttcggtcctatttataagagaaa 334  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  40430658 tatattatactcccttcgatcctatttataagagaaa 40430694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 43199488 - 43199452
Alignment:
Q  301 attatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||||| ||||||||||||||||||||||||    
T  43199488 attatactacctccggtcctatttataagagaaattt 43199452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 54743 - 54710
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  54743 atactacctccggtcctatttataagagaaattt 54710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 2890293 - 2890260
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  2890293 atactacctccggtcctatttataagagaaattt 2890260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 4245712 - 4245679
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  4245712 atactacctccggtcctatttataagagaaattt 4245679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 7785909 - 7785876
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  7785909 atactacctccggtcctatttataagagaaattt 7785876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 7805830 - 7805797
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  7805830 atactacctccggtcctatttataagagaaattt 7805797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 27422321 - 27422288
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||| ||||||||||||||||||||||||||||    
T  27422321 atactcccttcggtcctatttataagagaaattt 27422288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 32211494 - 32211461
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  32211494 atactacctccggtcctatttataagagaaattt 32211461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 33289392 - 33289359
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  33289392 atactacctccggtcctatttataagagaaattt 33289359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 3304408 - 3304376
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  3304408 tactacctccggtcctatttataagagaaattt 3304376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 6552655 - 6552687
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  6552655 tactacctccggtcctatttataagagaaattt 6552687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 7012171 - 7012203
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  7012171 tactacctccggtcctatttataagagaaattt 7012203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 12343270 - 12343238
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  12343270 tactacctccggtcctatttataagagaaattt 12343238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 15888482 - 15888450
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  15888482 tactacctccggtcctatttataagagaaattt 15888450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 32114605 - 32114573
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  32114605 tactacctccggtcctatttataagagaaattt 32114573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 39571333 - 39571301
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  39571333 tactacctccggtcctatttataagagaaattt 39571301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 44498317 - 44498285
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  44498317 tactacctccggtcctatttataagagaaattt 44498285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 7482221 - 7482257
Alignment:
Q  301 attatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||||| ||||||||||||||||||||||||    
T  7482221 attatactacctccggtcctatttataagagaaattt 7482257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Complemental strand, 38064045 - 38064011
Alignment:
Q  303 tatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||| ||||||||||||||||||||||||    
T  38064045 tatactacctccggtcctatttataagagaaattt 38064011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 1565860 - 1565827
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  1565860 atactacctccggtcctatttataagagaaattt 1565827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 1738578 - 1738545
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  1738578 atactacctccggtcctatttataagagaaattt 1738545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 7240748 - 7240781
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  7240748 atactacctccggtcctatttataagagaaattt 7240781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 28536882 - 28536849
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  28536882 atactacctccggtcctatttataagagaaattt 28536849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 46840859 - 46840892
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  46840859 atactacctccggtcctatttataagagaaattt 46840892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 23314269 - 23314237
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  23314269 tactacctccggtcctatttataagagaaattt 23314237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 31319529 - 31319497
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  31319529 tactacctccggtcctatttataagagaaattt 31319497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 36583395 - 36583427
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  36583395 tactacctccggtcctatttataagagaaattt 36583427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 38441460 - 38441492
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  38441460 tactacctccggtcctatttataagagaaattt 38441492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 23778 - 23817
Alignment:
Q  298 tatattatactaccttcggtcctatttataagagaaattt 337  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  23778 tatataatactacctccggtcctatttataagagaaattt 23817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 7579303 - 7579342
Alignment:
Q  298 tatattatactaccttcggtcctatttataagagaaattt 337  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  7579303 tataatatactacctccggtcctatttataagagaaattt 7579342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 48336256 - 48336295
Alignment:
Q  298 tatattatactaccttcggtcctatttataagagaaattt 337  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  48336256 tatataatactacctccggtcctatttataagagaaattt 48336295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 26231575 - 26231609
Alignment:
Q  303 tatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||| ||||||||||||||||||||||||    
T  26231575 tatactacctccggtcctatttataagagaaattt 26231609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 33551199 - 33551233
Alignment:
Q  303 tatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||| ||||||||||||||||||||||||    
T  33551199 tatactacctccggtcctatttataagagaaattt 33551233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 3372120 - 3372153
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  3372120 atactacctccggtcctatttataagagaaattt 3372153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 3992975 - 3993008
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  3992975 atactacctccggtcctatttataagagaaattt 3993008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 47833610 - 47833643
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  47833610 atactacctccggtcctatttataagagaaattt 47833643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 6122023 - 6121991
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  6122023 tactacctccggtcctatttataagagaaattt 6121991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 20538816 - 20538784
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  20538816 tactacctccggtcctatttataagagaaattt 20538784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 24704370 - 24704402
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  24704370 tactacctccggtcctatttataagagaaattt 24704402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 53337370 - 53337402
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  53337370 tactacctccggtcctatttataagagaaattt 53337402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 9981645 - 9981679
Alignment:
Q  303 tatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||| ||||||||||||||||||||||||    
T  9981645 tatactacctccggtcctatttataagagaaattt 9981679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 337
Target Start/End: Original strand, 34042694 - 34042728
Alignment:
Q  303 tatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||| ||||||||||||||||||||||||    
T  34042694 tatactacctccggtcctatttataagagaaattt 34042728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 11795932 - 11795965
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  11795932 atactacctccggtcctatttataagagaaattt 11795965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 12483759 - 12483726
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  12483759 atactacctccggtcctatttataagagaaattt 12483726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 26471196 - 26471163
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  26471196 atactacctccggtcctatttataagagaaattt 26471163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 27159489 - 27159456
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  27159489 atactacctccggtcctatttataagagaaattt 27159456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 44668224 - 44668191
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  44668224 atactacctccggtcctatttataagagaaattt 44668191  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 1050888 - 1050920
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  1050888 tactacctccggtcctatttataagagaaattt 1050920  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 23278131 - 23278099
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  23278131 tactacctccggtcctatttataagagaaattt 23278099  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 31842925 - 31842893
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  31842925 tactacctccggtcctatttataagagaaattt 31842893  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 39402096 - 39402064
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  39402096 tactacctccggtcctatttataagagaaattt 39402064  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 47216829 - 47216797
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  47216829 tactacctccggtcctatttataagagaaattt 47216797  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 47678408 - 47678372
Alignment:
Q  301 attatactaccttcggtcctatttataagagaaattt 337  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  47678408 attatactacctccggtcctatttataagaaaaattt 47678372  T

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Target: scaffold0482 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0482
Description:

Target: scaffold0482; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 12859 - 12892
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  12859 atactacctccggtcctatttataagagaaattt 12892  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 49504 - 49537
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  49504 atactacctccggtcctatttataagagaaattt 49537  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 582988 - 583021
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  582988 atactacctccggtcctatttataagagaaattt 583021  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 4443959 - 4443992
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||| ||||||||||||||||||||||||||||    
T  4443959 atacttccttcggtcctatttataagagaaattt 4443992  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 17025623 - 17025656
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  17025623 atactacctccggtcctatttataagagaaattt 17025656  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 20848073 - 20848106
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  20848073 atactacctccggtcctatttataagagaaattt 20848106  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Complemental strand, 37149086 - 37149053
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  37149086 atactacctccggtcctatttataagagaaattt 37149053  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 337
Target Start/End: Original strand, 37641952 - 37641985
Alignment:
Q  304 atactaccttcggtcctatttataagagaaattt 337  Q
    ||||||||| ||||||||||||||||||||||||    
T  37641952 atactacctccggtcctatttataagagaaattt 37641985  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Complemental strand, 1248982 - 1248954
Alignment:
Q  302 ttatactaccttcggtcctatttataaga 330  Q
    |||||||||||||||||||||||||||||    
T  1248982 ttatactaccttcggtcctatttataaga 1248954  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 9395350 - 9395382
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  9395350 tactacctccggtcctatttataagagaaattt 9395382  T

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Target: scaffold0464 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 6261 - 6229
Alignment:
Q  305 tactaccttcggtcctatttataagagaaattt 337  Q
    |||||||| ||||||||||||||||||||||||    
T  6261 tactacctccggtcctatttataagagaaattt 6229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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