View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19957_low_13 (Length: 330)
Name: NF19957_low_13
Description: NF19957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19957_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 34348688 - 34348996
Alignment:
| Q |
14 |
agataagttctctttaatttagaacatttattttgatctaattactaattgatgtgttggtatctttcttggtgttattagggtgaatcttcaaatggta |
113 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34348688 |
agataagttctctttaatttagagcatttattttgatctaattactaattgatgtgttggtatctttcttggtgttattagggtgaatcttcaaatggta |
34348787 |
T |
|
| Q |
114 |
gtttgtatactaccgaagtgttgcttgagggttgcacctctttgtcttaacctggaaatcgaccatggagctatagtaaatatgatccggtggacattga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34348788 |
gtttgtatactaccgaagtgttgcttgagggttgtacctctttgtcttaacttggaaatcgaccaaggagctatagtaaatatgatccggtggacattga |
34348887 |
T |
|
| Q |
214 |
cgtgcaaggactttaagagatagatgatcatcctcgatatgccatattgtgatttgatagtagcaa-gtgttcttannnnnnncttcaatactcatgata |
312 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
34348888 |
cgtgcaaggactttaagagagagatgatcgtccgcgatatgccatattgtgatttgatagttgcaaggtgttcttatttttttcttcaatactcatgata |
34348987 |
T |
|
| Q |
313 |
tatgtgatg |
321 |
Q |
| |
|
||||||||| |
|
|
| T |
34348988 |
tatgtgatg |
34348996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University